WormBase Tree Display for Gene: WBGene00038323

WBGene00038323 SMap: S_parent: Sequence: cb25.fpc4126
  Identity: Version: 2
    Name: CGC_name: Cbr-odc-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG19040
      Molecular_name: CBG19040
        CBG19040.1
        CBP11045
      Other_name: CBG_19040 Accession_evidence: NDB HE601047
      Public_name: Cbr-odc-1
    DB_info: Database: NDB locus_tag CBG_19040
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:08 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-odc-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: odc
    RNASeq_FPKM: WBls:0000002 110.324 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        89.2418 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        98.3238 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        99.2965 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        104.324 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        120.266 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        183.176 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 83.2159 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        89.5831 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        95.9503 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        102.437 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        93.8677 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 108.88 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        112.627 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        116.374 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        107.057 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        108.36 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        113.173 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        96.3146 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 22.9073 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        51.0601 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        64.7335 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        65.5394 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        60.3767 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        65.1365 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        88.3265 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 93.3371 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 120.625 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        152.499 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        156.284 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        301.824 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        66.922 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        84.9659 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 119.16 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        159.439 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        393.99 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        48.0196 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        76.5848 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        97.8724 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        162.025 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        257.012 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        77.3839 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        98.2719 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 105.102 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        107.183 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        130.783 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        87.735 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        95.6069 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        106.143 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        109.571 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        218.748 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 110.925 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        95.9503 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        100.088 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        117.38 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00141793
      00141794
    Ortholog (36)
    Paralog: WBGene00033029 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable catalytic activity. Predicted to be involved in polyamine biosynthetic process. Is an ortholog of C. elegans odc-1. In C. elegans, odc-1 is involved in putrescine biosynthetic process from ornithine. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG19040
    Corresponding_CDS_history: CBG19040:bp194
    Corresponding_transcript: CBG19040.1
    Other_sequence (64)
  Experimental_info: Expr_pattern: Expr1059829
    Microarray_results: GPL8303_CB6_WBGene00038323_A
      GPL14143_CBG19040_648-707_0.745_96_C
      GPL14143_CBG19040_928-987_0.948_4_A
      GPL14143_CBG19040_1089-1148_0.954_3_B
  Method: Gene