WormBase Tree Display for Gene: WBGene00038338

WBGene00038338 SMap: S_parent: Sequence: cb25.fpc4126
  Identity: Version: 3
    Name: CGC_name: Cbr-nhr-139 From_analysis: Inferred_from_orthology
      Sequence_name: CBG19059
      Molecular_name: CBG19059
        CBG19059.1
        CBP39934
      Other_name: CBG_19059 Accession_evidence: NDB HE601047
      Public_name: Cbr-nhr-139
    DB_info: Database: NDB locus_tag CBG_19059
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:08 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 31 Aug 2016 10:30:13 WBPerson4025 Event: Split_into: WBGene00270732
        3 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cbr-nhr-139
      Split_into: WBGene00270732
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    RNASeq_FPKM: WBls:0000002 1.92483 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        2.45107 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        3.15558 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        5.09083 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        2.72036 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        2.98964 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        3.11409 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.584752 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        0.715392 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.846031 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0.559997 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        0.663593 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 5.52871 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        6.24574 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        6.96276 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        4.98022 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        5.54852 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        5.71901 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        5.74784 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
      WBls:0000024 (12)
      WBls:0000027 0.369981 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.438583 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        1.65979 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        4.17081 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        2.3047 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        2.38211 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        4.54905 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 3.12529 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.377307 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        2.94878 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        3.85544 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        4.19465 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        5.44052 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        6.65517 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 1.34864 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        1.80265 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        1.80451 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        1.80637 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        2.51879 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        5.11751 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        3.46194 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        3.77311 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        5.73463 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        6.82886 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.548717 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        1.0037 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.20085 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        1.47551 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        1.79344 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        1.21644 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.33818 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        2.28011 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 1.92483 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        3.08663 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        2.96921 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        3.3869 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00141819
      00141820
      00141821
      00141822
    Ortholog (19)
    Paralog (220)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-139. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG19059
    Corresponding_CDS_history: CBG19059:bp255
    Corresponding_transcript: CBG19059.1
    Other_sequence: CJC04998_1
  Experimental_info: Expr_pattern: Expr1062758
    Microarray_results: GPL8303_CB6_WBGene00038338_A
      GPL14143_CBG19059_898-957_0.922_3_C
      GPL14143_CBG19059_1063-1122_0.932_2_B
      GPL14143_CBG19059_1139-1198_0.939_1_A
  Method: Gene