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WormBase Tree Display for Gene: WBGene00038411

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Name Class

WBGene00038411SMapS_parentSequencecb25.fpc4126
IdentityVersion2
NameCGC_nameCbr-nhr-143From_analysisInferred_from_orthology
Sequence_nameCBG19143
Molecular_nameCBG19143a
CBG19143a.1
CBP28864
CBG19143b
CBP46971
CBG19143b.1
Other_nameCBG_19143Accession_evidenceNDBHE601047
Public_nameCbr-nhr-143
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nhr-143
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:000000213.198From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.497From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
6.34328From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
7.67943From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.55904From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
5.45116From_analysisRNASeq.briggsae.WBls:0000002.control_median
6.89933From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.361997From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.723993From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.630118From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.16636From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000043.79858From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
4.64725From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
5.49592From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
4.24341From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
5.16918From_analysisRNASeq.briggsae.WBls:0000004.control_mean
5.17176From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
7.13623From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.4215From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.18521From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
20.9898From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
7.53217From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.0875From_analysisRNASeq.briggsae.WBls:0000027.control_median
11.452From_analysisRNASeq.briggsae.WBls:0000027.control_mean
23.2113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003511.0172From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.775094From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
13.4195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
18.338From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.16981From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
9.6756From_analysisRNASeq.briggsae.WBls:0000038.control_mean
9.79465From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:00000415.05658From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
5.13191From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
5.94853From_analysisRNASeq.briggsae.WBls:0000041.control_median
6.35337From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.76515From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
8.45986From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
6.90789From_analysisRNASeq.briggsae.WBls:0000041.control_median
6.99525From_analysisRNASeq.briggsae.WBls:0000041.control_mean
7.05062From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
9.5074From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.979From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.39392From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
3.52459From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.55707From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
4.41944From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
3.06035From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.46707From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
3.49583From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001015.13191From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.36282From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
5.15183From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.34303From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141915
00141916
00141917
00141918
Ortholog (21)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-143.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19143a
CBG19143b
Corresponding_CDS_historyCBG19143:bp194
Corresponding_transcriptCBG19143a.1
CBG19143b.1
Experimental_infoExpr_patternExpr1060428
Microarray_resultsGPL8303_CB6_WBGene00038411_A
GPL8303_CB6_WBGene00038411_B
GPL14143_CBG19143_824-883_0.672_141_B
GPL14143_CBG19143_932-991_0.946_2_C
GPL14143_CBG19143_1231-1290_0.917_9_A
Expression_clusterWBPaper00058955:heatshock_upregulated_CBG
MethodGene