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WormBase Tree Display for Gene: WBGene00039011

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Name Class

WBGene00039011SMapS_parentSequencecb25.fpc4152
IdentityVersion3
NameCGC_nameCbr-nhr-46From_analysisInferred_from_orthology
Sequence_nameCBG19870
Molecular_nameCBG19870a
CBG19870a.1
CBP25565
CBG19870b
CBP44721
CBG19870b.1
Other_nameCBG_19870Accession_evidenceNDBHE601481
CBG_19869
Public_nameCbr-nhr-46
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nhr-46
331 Aug 2016 10:29:44WBPerson4025EventAcquires_mergeWBGene00039010
Acquires_mergeWBGene00039010
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:000000210.9815From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
15.6183From_analysisRNASeq.briggsae.WBls:0000002.control_mean
17.8286From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
18.0449From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
12.9758From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
14.9577From_analysisRNASeq.briggsae.WBls:0000002.control_mean
15.4022From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000033.86666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
5.5916From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
7.31654From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
6.66674From_analysisRNASeq.briggsae.WBls:0000003.control_mean
8.81703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000429.6324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
29.9694From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
30.3065From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
27.4159From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
28.8962From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
29.5474From_analysisRNASeq.briggsae.WBls:0000004.control_mean
31.4859From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002710.3996From_analysisRNASeq.briggsae.WBls:0000027.control_mean
20.1592From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.7141From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
8.32554From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
14.2424From_analysisRNASeq.briggsae.WBls:0000027.control_median
22.8541From_analysisRNASeq.briggsae.WBls:0000027.control_mean
60.2176From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003553.7216From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003827.0284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
28.1726From_analysisRNASeq.briggsae.WBls:0000038.control_mean
29.1988From_analysisRNASeq.briggsae.WBls:0000038.control_median
31.3692From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
45.3446From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
8.94818From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004112.1778From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
4.70979From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
5.00034From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
5.43507From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.8698From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
6.93943From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.97864From_analysisRNASeq.briggsae.WBls:0000041.control_median
7.58846From_analysisRNASeq.briggsae.WBls:0000041.control_mean
8.08749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
9.68554From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006312.5986From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
12.8554From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
15.151From_analysisRNASeq.briggsae.WBls:0000063.control_mean
15.1806From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
16.3451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
18.7754From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
15.3393From_analysisRNASeq.briggsae.WBls:0000063.control_mean
15.7306From_analysisRNASeq.briggsae.WBls:0000063.control_median
16.2807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010116.3451From_analysisRNASeq.briggsae.total_over_all_stages.control_median
22.8624From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
16.3129From_analysisRNASeq.briggsae.total_over_all_stages.control_median
22.8124From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00142517
00142518
00142519
00142520
Ortholog (41)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-46.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19870a
CBG19870b
Corresponding_CDS_historyCBG19870:bp194
CBG19870:bp255
Corresponding_transcriptCBG19870a.1
CBG19870b.1
Other_sequence (26)
Experimental_infoExpr_patternExpr1052445
Expr1057349
Microarray_resultsGPL8303_CB6_WBGene00039011_A
GPL8303_CB6_WBGene00039011_B
GPL14143_CBG19869_71-130_0.941_1_A
GPL14143_CBG19870_470-529_0.840_59_C
GPL14143_CBG19870_1176-1235_0.928_4_B
GPL14143_CBG19870_1232-1291_0.871_34_A
MethodGene