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WormBase Tree Display for Gene: WBGene00039178

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Name Class

WBGene00039178SMapS_parentSequencecb25.fpc4152
IdentityVersion2
NameCGC_nameCbr-tni-4From_analysisInferred_from_orthology
Sequence_nameCBG20106
Molecular_nameCBG20106a
CBG20106a.1
CBP30767
CBG20106b
CBP44395
CBG20106b.1
Other_nameCBG_20106Accession_evidenceNDBHE601481
Public_nameCbr-tni-4
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-tni-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtni
RNASeq_FPKMWBls:0000002118.545From_analysisRNASeq.briggsae.WBls:0000002.control_mean
171.842From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
175.411From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
8.38269From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
21.2709From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
94.2266From_analysisRNASeq.briggsae.WBls:0000002.control_mean
96.5564From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:000000316.4873From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
8.24365From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
10.4633From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
8.98353From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000445.1645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
51.2421From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
57.3197From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
43.0617From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
51.7552From_analysisRNASeq.briggsae.WBls:0000004.control_mean
53.3087From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
59.9215From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002713.0402From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
44.7609From_analysisRNASeq.briggsae.WBls:0000027.control_mean
46.0882From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
75.1544From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
118.085From_analysisRNASeq.briggsae.WBls:0000027.control_mean
338.056From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
60.6213From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:0000035165.107From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038161.69From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
185.949From_analysisRNASeq.briggsae.WBls:0000038.control_mean
203.41From_analysisRNASeq.briggsae.WBls:0000038.control_median
245.13From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
266.281From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
70.6943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004128.4927From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
41.4807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
49.7893From_analysisRNASeq.briggsae.WBls:0000041.control_median
51.0602From_analysisRNASeq.briggsae.WBls:0000041.control_mean
58.098From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
76.1693From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
50.8518From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
54.4749From_analysisRNASeq.briggsae.WBls:0000041.control_median
58.5994From_analysisRNASeq.briggsae.WBls:0000041.control_mean
96.5041From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006336.7616From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
39.6929From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
40.8353From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
43.04From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
44.9476From_analysisRNASeq.briggsae.WBls:0000063.control_mean
64.408From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
41.9376From_analysisRNASeq.briggsae.WBls:0000063.control_median
51.767From_analysisRNASeq.briggsae.WBls:0000063.control_mean
85.8643From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101106.17From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
58.098From_analysisRNASeq.briggsae.total_over_all_stages.control_median
101.006From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
57.7089From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00142651
Ortholog (34)
ParalogWBGene00035711Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037002Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042489Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be part of troponin complex. Is an ortholog of C. elegans tni-4. In C. elegans, tni-4 is involved in embryo development and pharyngeal pumping.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20106a
CBG20106b
Corresponding_CDS_historyCBG20106:bp194
Corresponding_transcriptCBG20106a.1
CBG20106b.1
Other_sequence (48)
Experimental_infoExpr_patternExpr1060974
Microarray_resultsGPL8303_CB6_WBGene00039178_A
GPL8303_CB6_WBGene00039178_B
GPL14143_CBG20106_148-207_0.895_20_B
GPL14143_CBG20106_340-399_0.923_10_A
GPL14143_CBG20106_490-549_0.958_5_C
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene