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WormBase Tree Display for Gene: WBGene00039383

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Name Class

WBGene00039383SMapS_parentSequencecb25.fpc4180
IdentityVersion2
NameCGC_nameCbr-oxa-1From_analysisInferred_from_orthology
Sequence_nameCBG20396
Molecular_nameCBG20396
CBG20396.1
CBP40633
Other_nameCBG_20396Accession_evidenceNDBHE601396
Public_nameCbr-oxa-1
DB_infoDatabaseNDBlocus_tagCBG_20396
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
204 Mar 2014 11:26:21WBPerson2970Name_changeCGC_nameCbr-oxa-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classoxa
RNASeq_FPKMWBls:000000225.3896From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
26.8366From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
27.0887From_analysisRNASeq.briggsae.WBls:0000002.control_mean
29.04From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
27.0681From_analysisRNASeq.briggsae.WBls:0000002.control_median
27.1415From_analysisRNASeq.briggsae.WBls:0000002.control_mean
27.2996From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000312.5387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
13.9166From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
15.2946From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
13.0112From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
13.6148From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000422.1277From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
22.486From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
22.8442From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
17.7837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
22.1167From_analysisRNASeq.briggsae.WBls:0000004.control_mean
22.359From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
25.469From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:000002712.7484From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.9261From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
19.16From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.15919From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
13.3279From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.9962From_analysisRNASeq.briggsae.WBls:0000027.control_median
15.0663From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003523.2298From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003816.259From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
21.3572From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
28.2344From_analysisRNASeq.briggsae.WBls:0000038.control_mean
29.4604From_analysisRNASeq.briggsae.WBls:0000038.control_median
37.5635From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
37.7581From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004127.6102From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
33.5624From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
35.0683From_analysisRNASeq.briggsae.WBls:0000041.control_mean
36.2392From_analysisRNASeq.briggsae.WBls:0000041.control_median
38.916From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
40.1846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
28.8052From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
28.988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
31.2752From_analysisRNASeq.briggsae.WBls:0000041.control_median
33.0111From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006328.9011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
30.3606From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
37.8567From_analysisRNASeq.briggsae.WBls:0000063.control_mean
41.6246From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
42.1426From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
46.2546From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
32.8705From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
37.0257From_analysisRNASeq.briggsae.WBls:0000063.control_mean
37.2476From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010125.3896From_analysisRNASeq.briggsae.total_over_all_stages.control_median
25.6668From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
25.1576From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
25.4293From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00142874
00142875
Ortholog (29)
ParalogWBGene00030215Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable membrane insertase activity. Predicted to be located in membrane. Is an ortholog of C. elegans oxa-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20396
Corresponding_CDS_historyCBG20396:bp194
CBG20396:bp255
Corresponding_transcriptCBG20396.1
Other_sequence (18)
Experimental_infoExpr_patternExpr1065091
Microarray_resultsGPL8303_CB6_WBGene00039383_A
GPL14143_CBG20396_499-558_0.680_63_B
GPL14143_CBG20396_746-805_0.948_1_A
GPL14143_CBG20396_859-918_0.706_54_C
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_downregulated
MethodGene