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WormBase Tree Display for Gene: WBGene00039434

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Name Class

WBGene00039434SMapS_parentSequencecb25.fpc4181
IdentityVersion2
NameCGC_nameCbr-cdo-1From_analysisInferred_from_orthology
Sequence_nameCBG20456
Molecular_nameCBG20456
CBG20456.1
CBP11524
Other_nameCBG_20456Accession_evidenceNDBHE601085
Public_nameCbr-cdo-1
DB_infoDatabaseNDBlocus_tagCBG_20456
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
221 Jan 2009 16:16:33WBPerson2970Name_changeCGC_nameCbr-cdo-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcdo
RNASeq_FPKMWBls:000000255.8187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
66.5415From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
66.8195From_analysisRNASeq.briggsae.WBls:0000002.control_mean
78.0982From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
53.6533From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
61.1801From_analysisRNASeq.briggsae.WBls:0000002.control_median
63.5279From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000035.8631From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
5.93015From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
5.9972From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
6.62502From_analysisRNASeq.briggsae.WBls:0000003.control_mean
8.01477From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000414.3367From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
17.2528From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
20.1688From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
15.0391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
17.8792From_analysisRNASeq.briggsae.WBls:0000004.control_mean
19.3332From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
20.5182From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002716.0113From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.22033From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
37.2093From_analysisRNASeq.briggsae.WBls:0000027.control_mean
92.3964From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
45.4833From_analysisRNASeq.briggsae.WBls:0000027.control_median
46.6458From_analysisRNASeq.briggsae.WBls:0000027.control_mean
74.9553From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003564.213From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038128.673From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
17.1627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
83.5062From_analysisRNASeq.briggsae.WBls:0000038.control_mean
90.4434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
94.0947From_analysisRNASeq.briggsae.WBls:0000038.control_median
97.7459From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041109.512From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
25.95From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
37.5585From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
42.4243From_analysisRNASeq.briggsae.WBls:0000041.control_median
47.2901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
55.0776From_analysisRNASeq.briggsae.WBls:0000041.control_mean
168.162From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
71.8201From_analysisRNASeq.briggsae.WBls:0000041.control_median
80.8038From_analysisRNASeq.briggsae.WBls:0000041.control_mean
96.3501From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006320.9099From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
22.2144From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
23.1593From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
23.8618From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
28.9679From_analysisRNASeq.briggsae.WBls:0000063.control_mean
54.6943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
23.5105From_analysisRNASeq.briggsae.WBls:0000063.control_median
30.4431From_analysisRNASeq.briggsae.WBls:0000063.control_mean
37.8186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010147.2901From_analysisRNASeq.briggsae.total_over_all_stages.control_median
49.8289From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
42.5544From_analysisRNASeq.briggsae.total_over_all_stages.control_median
51.0233From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00142904
00142905
Ortholog (21)
Structured_descriptionAutomated_descriptionPredicted to enable iron ion binding activity and oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen. Is an ortholog of C. elegans cdo-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20456
Corresponding_CDS_historyCBG20456:bp194
CBG20456:bp206
Corresponding_transcriptCBG20456.1
Other_sequence (59)
Experimental_infoExpr_patternExpr1068238
Microarray_resultsGPL8303_CB6_WBGene00039434_A
GPL8303_CB6_WBGene00039434_B
GPL14143_CBG20456_150-209_0.832_13_B
GPL14143_CBG20456_246-305_0.819_17_A
GPL14143_CBG20456_343-402_0.768_27_C
MethodGene