Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00039438

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00039438SMapS_parentSequencecb25.fpc4184
IdentityVersion2
NameCGC_nameCbr-xpa-1From_analysisInferred_from_orthology
Sequence_nameCBG20462
Molecular_nameCBG20462
CBG20462.1
CBP19876
Other_nameCBG_20462Accession_evidenceNDBHE601012
Public_nameCbr-xpa-1
DB_infoDatabaseNDBlocus_tagCBG_20462
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-xpa-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxpa
RNASeq_FPKMWBls:000000235.1826From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
38.3908From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
40.4531From_analysisRNASeq.briggsae.WBls:0000002.control_mean
47.7859From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
41.6541From_analysisRNASeq.briggsae.WBls:0000002.control_mean
41.8241From_analysisRNASeq.briggsae.WBls:0000002.control_median
45.2573From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000367.8872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
76.16From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
84.4328From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
61.2749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
71.1983From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000422.8903From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
23.8912From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
24.8921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
22.4816From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
23.8812From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
24.269From_analysisRNASeq.briggsae.WBls:0000004.control_mean
27.1997From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.4293From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.20366From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
4.88142From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.83813From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.24958From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.61774From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
5.78303From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000356.25404From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003813.4001From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
15.9147From_analysisRNASeq.briggsae.WBls:0000038.control_mean
16.0186From_analysisRNASeq.briggsae.WBls:0000038.control_median
18.637From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
21.7785From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
9.8432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004155.8867From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
78.4774From_analysisRNASeq.briggsae.WBls:0000041.control_mean
84.1388From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
85.238From_analysisRNASeq.briggsae.WBls:0000041.control_median
86.3371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
87.547From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
75.3562From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
80.2327From_analysisRNASeq.briggsae.WBls:0000041.control_mean
92.1303From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006329.4434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
31.0553From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
37.8865From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
39.0735From_analysisRNASeq.briggsae.WBls:0000063.control_mean
45.77From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
51.2123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
40.8311From_analysisRNASeq.briggsae.WBls:0000063.control_mean
41.8283From_analysisRNASeq.briggsae.WBls:0000063.control_median
49.6193From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010124.8921From_analysisRNASeq.briggsae.total_over_all_stages.control_median
32.6405From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
28.3216From_analysisRNASeq.briggsae.total_over_all_stages.control_median
35.5104From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00142908
00142909
Ortholog (29)
Structured_descriptionAutomated_descriptionPredicted to enable damaged DNA binding activity. Predicted to be involved in nucleotide-excision repair. Is an ortholog of C. elegans xpa-1. In C. elegans, xpa-1 is involved in several processes, including DNA repair; determination of adult lifespan; and response to UV-C.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20462
Corresponding_CDS_historyCBG20462:bp194
Corresponding_transcriptCBG20462.1
Other_sequence (32)
Experimental_infoExpr_patternExpr1059165
Microarray_resultsGPL8303_CB6_WBGene00039438_A
GPL8303_CB6_WBGene00039438_B
GPL14143_CBG20462_219-278_0.918_13_C
GPL14143_CBG20462_438-497_0.955_1_B
GPL14143_CBG20462_655-714_0.944_3_A
MethodGene