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WormBase Tree Display for Gene: WBGene00039451

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Name Class

WBGene00039451SMapS_parentSequencecb25.fpc4184
IdentityVersion2
NameCGC_nameCbr-prpf-4From_analysisInferred_from_orthology
Sequence_nameCBG20476
Molecular_nameCBG20476a
CBG20476a.1
CBP04819
CBG20476b
CBP42465
CBG20476a.2
CBG20476b.1
CBG20476b.2
Other_nameCBG_20476Accession_evidenceNDBHE601012
Public_nameCbr-prpf-4
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-prpf-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classprpf
RNASeq_FPKMWBls:000000211.8798From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
38.4804From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
44.6061From_analysisRNASeq.briggsae.WBls:0000002.control_mean
83.4582From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
38.0695From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
38.2749From_analysisRNASeq.briggsae.WBls:0000002.control_median
42.972From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003136.167From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
184.932From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
233.696From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
124.529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
164.797From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000430.8861From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
33.1814From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
35.4767From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
31.9066From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
33.531From_analysisRNASeq.briggsae.WBls:0000004.control_mean
34.3206From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
35.065From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000272.78581From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
6.29369From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.77808From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
9.31718From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
17.6564From_analysisRNASeq.briggsae.WBls:0000027.control_mean
51.7446From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
8.04763From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003538.5675From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000383.35481From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
35.0391From_analysisRNASeq.briggsae.WBls:0000038.control_median
39.9315From_analysisRNASeq.briggsae.WBls:0000038.control_mean
63.1522From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
6.92607From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
86.2931From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004141.2605From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
58.9415From_analysisRNASeq.briggsae.WBls:0000041.control_mean
59.7658From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
63.1839From_analysisRNASeq.briggsae.WBls:0000041.control_median
66.602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
68.1377From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
47.5067From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
51.6949From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
55.7304From_analysisRNASeq.briggsae.WBls:0000041.control_median
55.8279From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006325.9691From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
28.832From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
31.2783From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
32.9217From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
34.8271From_analysisRNASeq.briggsae.WBls:0000063.control_mean
55.1343From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
32.1From_analysisRNASeq.briggsae.WBls:0000063.control_median
37.2972From_analysisRNASeq.briggsae.WBls:0000063.control_mean
49.648From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010137.1011From_analysisRNASeq.briggsae.total_over_all_stages.control_median
47.3474From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
38.2749From_analysisRNASeq.briggsae.total_over_all_stages.control_median
48.3568From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00142924
00142925
00142926
Ortholog (31)
Paralog (18)
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity and protein kinase activity. Is an ortholog of C. elegans prpf-4.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20476a
CBG20476b
Corresponding_CDS_historyCBG20476:bp194
CBG20476:bp255
Corresponding_transcriptCBG20476a.1
CBG20476a.2
CBG20476b.1
CBG20476b.2
Other_sequence (55)
Experimental_infoExpr_patternExpr1059274
Microarray_resultsGPL8303_CB6_WBGene00039451_A
GPL8303_CB6_WBGene00039451_B
GPL14143_CBG20476_1219-1278_0.791_151_C
GPL14143_CBG20476_2102-2161_0.944_3_B
GPL14143_CBG20476_2223-2282_0.975_1_A
MethodGene