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WormBase Tree Display for Gene: WBGene00039505

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Name Class

WBGene00039505SMapS_parentSequencecb25.fpc4194
IdentityVersion2
NameCGC_nameCbr-nhr-79From_analysisInferred_from_orthology
Sequence_nameCBG20542
Molecular_nameCBG20542
CBG20542.1
CBP46130
Other_nameCBG_20542Accession_evidenceNDBHE601134
Public_nameCbr-nhr-79
DB_infoDatabaseNDBlocus_tagCBG_20542
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nhr-79
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:00000022.219From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.40396From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
4.4794From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.81523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
2.51445From_analysisRNASeq.briggsae.WBls:0000002.control_median
2.62493From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
4.01578From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.70856From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
1.09109From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.47362From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.10325From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.12757From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000043.39814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
3.77892From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
4.1597From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
3.29074From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
3.29735From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
3.65078From_analysisRNASeq.briggsae.WBls:0000004.control_mean
4.10796From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.122084From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.821632From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.57142From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.77056From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.56831From_analysisRNASeq.briggsae.WBls:0000027.control_median
2.31499From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
3.25732From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000352.57594From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.654818From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.82708From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.95235From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.07763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.45024From_analysisRNASeq.briggsae.WBls:0000038.control_mean
7.24142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000412.03067From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.17267From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.31073From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.44879From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.61721From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.81671From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.86619From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.1275From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.2836From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
5.01253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631.71691From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.89539From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.99534From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.80872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2.95598From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.87122From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
1.89136From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.93328From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001012.57594From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.05793From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.71683From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.04239From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00142983
00142984
00142985
00142986
Ortholog (25)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-79.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20542
Corresponding_CDS_historyCBG20542:bp194
CBG20542:bp255
Corresponding_transcriptCBG20542.1
Other_sequenceJI466538.1
MH08565
CJC00467_1
MHC08813_1
JI474120.1
Experimental_infoExpr_patternExpr1062696
Microarray_resultsGPL8303_CB6_WBGene00039505_A
GPL8303_CB6_WBGene00039505_B
GPL8303_CB6_WBGene00039505_C
GPL8303_CB6_WBGene00039505_D
GPL8303_CB6_WBGene00039505_E
GPL14143_CBG20542_770-829_0.676_87_B
GPL14143_CBG20542_859-918_0.506_141_A
GPL14143_CBG20542_970-1029_0.964_1_C
MethodGene