WormBase Tree Display for Gene: WBGene00039635

WBGene00039635 SMap: S_parent: Sequence: cb25.fpc4206b
  Identity: Version: 2
    Name: CGC_name: Cbr-nhr-70 From_analysis: Inferred_from_orthology
      Sequence_name: CBG20699
      Molecular_name: CBG20699
        CBG20699.1
        CBP04899
      Other_name: CBG_20699 Accession_evidence: NDB HE600939
      Public_name: Cbr-nhr-70
    DB_info: Database: NDB locus_tag CBG_20699
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:09 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-nhr-70
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele: WBVar00128929
      WBVar00058214
      WBVar00058219
    RNASeq_FPKM: WBls:0000002 6.4806 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        8.19713 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        8.50783 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        9.60295 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        4.01126 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        7.15066 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        7.49422 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 4.15594 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        4.64059 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        5.12524 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        4.65092 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        4.67158 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 10.5482 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        11.3074 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        9.78905 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        10.6294 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        11.4274 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        12.3677 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        13.0436 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 0.714044 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        19.1038 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        2.42072 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        7.41286 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        10.3677 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        6.39421 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        8.15157 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 8.50674 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 10.112 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        11.4701 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        13.5128 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        2.7332 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        8.75391 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        9.1175 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
      WBls:0000041 2.96457 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        4.15697 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        4.1641 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        4.17123 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        4.27259 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        5.79761 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        4.40972 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        4.57625 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        4.6482 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        5.71895 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        3.97279 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        4.8149 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        6.13875 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        6.96277 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        7.0002 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        5.15357 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        6.49284 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        6.84693 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 6.96277 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        7.49901 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        6.90485 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        7.6257 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00143086
      00143087
      00143088
      00143089
    Ortholog (29)
    Paralog (220)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-70. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG20699
    Corresponding_CDS_history: CBG20699:bp194
    Corresponding_transcript: CBG20699.1
    Other_sequence: FK801587.1
      GO253015.1
      CR05291
      HBC20016_1
      EX011084.1
      GO240638.1
      GO250521.1
      CRC01775_1
      MA03180
      MP00843
  Experimental_info: Expr_pattern: Expr1064050
    Microarray_results: GPL8303_CB6_WBGene00039635_A
      GPL8303_CB6_WBGene00039635_B
      GPL8303_CB6_WBGene00039635_C
      GPL8303_CB6_WBGene00039635_D
      GPL8303_CB6_WBGene00039635_E
      GPL14143_CBG20699_490-549_0.804_17_C
      GPL14143_CBG20699_824-883_0.828_3_A
      GPL14143_CBG20699_1120-1179_0.855_1_B
  Method: Gene