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WormBase Tree Display for Gene: WBGene00039648

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Name Class

WBGene00039648SMapS_parentSequencecb25.fpc4206b
IdentityVersion2
NameCGC_nameCbr-col-42From_analysisInferred_from_orthology
Sequence_nameCBG20714
Molecular_nameCBG20714
CBG20714.1
CBP11675
Other_nameCBG_20714Accession_evidenceNDBHE600939
Public_nameCbr-col-42
DB_infoDatabaseNDBlocus_tagCBG_20714
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
222 May 2015 11:52:21WBPerson2970Name_changeCGC_nameCbr-col-42
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
RNASeq_FPKMWBls:00000021379.49From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
421.205From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
845.55From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
882.082From_analysisRNASeq.briggsae.WBls:0000002.control_mean
379.044From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
633.378From_analysisRNASeq.briggsae.WBls:0000002.control_median
756.322From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.453943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.86448From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
3.27501From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.579712From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
1.43622From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000040From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.123048From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.199163From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.200868From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.215209From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:0000027135.628From_analysisRNASeq.briggsae.WBls:0000027.control_mean
186.864From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
198.351From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
21.6676From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
149.273From_analysisRNASeq.briggsae.WBls:0000027.control_mean
188.537From_analysisRNASeq.briggsae.WBls:0000027.control_median
190.21From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351057.35From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381158.91From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1721.16From_analysisRNASeq.briggsae.WBls:0000038.control_median
1827.45From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2283.4From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3332.76From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
534.72From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000411061.79From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
488.947From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
827.431From_analysisRNASeq.briggsae.WBls:0000041.control_mean
866.966From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
879.494From_analysisRNASeq.briggsae.WBls:0000041.control_median
892.021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
106.35From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
473.164From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
648.206From_analysisRNASeq.briggsae.WBls:0000041.control_mean
677.956From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
218.254From_analysisRNASeq.briggsae.WBls:0000063.control_mean
246.563From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
270.908From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
285.693From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
288.104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
2316.67From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
278.301From_analysisRNASeq.briggsae.WBls:0000063.control_median
567.99From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:0000101421.205From_analysisRNASeq.briggsae.total_over_all_stages.control_median
703.495From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
321.05From_analysisRNASeq.briggsae.total_over_all_stages.control_median
628.105From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00143090
Ortholog (24)
Paralog (155)
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of cuticle. Is an ortholog of C. elegans col-42.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20714
Corresponding_CDS_historyCBG20714:bp194
Corresponding_transcriptCBG20714.1
Other_sequence (16)
Experimental_infoExpr_patternExpr1055510
Microarray_resultsGPL8303_CB6_WBGene00039648_A
GPL8303_CB6_WBGene00039648_B
GPL14143_CBG20714_160-219_0.585_49_C
GPL14143_CBG20714_238-297_0.732_1_A
GPL14143_CBG20714_597-656_0.670_7_B
MethodGene