WormBase Tree Display for Gene: WBGene00039658

WBGene00039658 SMap: S_parent: Sequence: cb25.fpc4206b
  Identity: Version: 2
    Name: CGC_name: Cbr-nhr-170 From_analysis: Inferred_from_orthology
      Sequence_name: CBG20729
      Molecular_name: CBG20729
        CBG20729.1
        CBP49030
      Other_name: CBG_20729 Accession_evidence: NDB HE600939
      Public_name: Cbr-nhr-170
    DB_info: Database: NDB locus_tag CBG_20729
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:09 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:05 WBPerson2970 Name_change: CGC_name: Cbr-nhr-170
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    RNASeq_FPKM: WBls:0000002 1.83548 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        2.67077 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        2.84497 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        4.02867 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        1.98143 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        2.3261 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        2.62909 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.135716 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.271433 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.392544 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        0.906198 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 1.37005 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        1.40385 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        1.43765 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0.601241 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        1.18093 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        1.24685 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        1.24886 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 (12)
      WBls:0000027 0.395237 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.996704 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        1.33828 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.6229 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        1.8098 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        3.47888 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        9.90067 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 5.20232 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 1.02133 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        2.52306 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        3.70268 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        3.7027 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        4.88235 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        6.38396 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 1.3579 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        1.46744 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        1.5004 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        1.53336 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        1.93721 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        3.39016 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        1.68274 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        1.83212 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        2.05092 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.72456 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 1.08489 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        1.56536 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.91801 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        2.24481 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        2.57907 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        1.65103 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.99871 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        2.0794 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 1.91801 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.48577 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        1.87674 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.4897 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00143100
      00143101
      00143102
      00143103
    Ortholog (44)
    Paralog (220)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-170. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG20729
    Corresponding_CDS_history: CBG20729:bp194
      CBG20729:bp265
    Corresponding_transcript: CBG20729.1
  Experimental_info: Expr_pattern: Expr1051809
    Microarray_results: GPL8303_CB6_WBGene00039658_A
      GPL14143_CBG20729_601-660_0.799_11_C
      GPL14143_CBG20729_845-904_0.806_8_B
      GPL14143_CBG20729_1034-1093_0.849_1_A
  Method: Gene