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WormBase Tree Display for Gene: WBGene00039902

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Name Class

WBGene00039902SMapS_parentSequencecb25.fpc4206c
IdentityVersion2
NameCGC_nameCbr-tpi-1From_analysisInferred_from_orthology
Sequence_nameCBG21017
Molecular_nameCBG21017
CBG21017.1
CBP04916
Other_nameCBG_21017Accession_evidenceNDBHE600928
Public_nameCbr-tpi-1
DB_infoDatabaseNDBlocus_tagCBG_21017
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-tpi-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtpi
RNASeq_FPKMWBls:0000002445.986From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
451.028From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
457.391From_analysisRNASeq.briggsae.WBls:0000002.control_mean
475.16From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
248.792From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
405.241From_analysisRNASeq.briggsae.WBls:0000002.control_mean
448.507From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:0000003250.327From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
282.445From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
314.564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
299.903From_analysisRNASeq.briggsae.WBls:0000003.control_mean
334.818From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004145.827From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
152.213From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
158.599From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
149.034From_analysisRNASeq.briggsae.WBls:0000004.control_mean
159.854From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
182.252From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
98.6389From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:0000027151.31From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
166.382From_analysisRNASeq.briggsae.WBls:0000027.control_mean
281.185From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
66.6501From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
216.247From_analysisRNASeq.briggsae.WBls:0000027.control_median
226.247From_analysisRNASeq.briggsae.WBls:0000027.control_mean
405.842From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035627.394From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038259.254From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
315.365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
412.674From_analysisRNASeq.briggsae.WBls:0000038.control_median
487.727From_analysisRNASeq.briggsae.WBls:0000038.control_mean
509.983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
866.305From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041357.583From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
397.222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
417.52From_analysisRNASeq.briggsae.WBls:0000041.control_mean
418.111From_analysisRNASeq.briggsae.WBls:0000041.control_median
439From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
476.273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
404.588From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
421.794From_analysisRNASeq.briggsae.WBls:0000041.control_median
445.287From_analysisRNASeq.briggsae.WBls:0000041.control_mean
597.058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:0000063192.887From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
194.154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
199.922From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
203.933From_analysisRNASeq.briggsae.WBls:0000063.control_mean
205.436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
227.268From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
202.679From_analysisRNASeq.briggsae.WBls:0000063.control_median
257.474From_analysisRNASeq.briggsae.WBls:0000063.control_mean
525.179From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101315.365From_analysisRNASeq.briggsae.total_over_all_stages.control_median
338.733From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
316.282From_analysisRNASeq.briggsae.total_over_all_stages.control_median
336.323From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00143388
Ortholog (32)
Structured_descriptionAutomated_descriptionPredicted to enable triose-phosphate isomerase activity. Is an ortholog of C. elegans tpi-1. In C. elegans, tpi-1 is involved in cell redox homeostasis and determination of adult lifespan.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG21017
Corresponding_CDS_historyCBG21017:bp194
Corresponding_transcriptCBG21017.1
Other_sequence (176)
Experimental_infoExpr_patternExpr1066652
Microarray_resultsGPL8303_CB6_WBGene00039902_A
GPL8303_CB6_WBGene00039902_B
GPL14143_CBG21017_160-219_0.848_3_A
GPL14143_CBG21017_194-253_0.865_2_C
GPL14143_CBG21017_540-599_0.769_26_B
Expression_clusterWBPaper00051425:CB_L4_vs_embryo_upregulated
MethodGene