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WormBase Tree Display for Gene: WBGene00040077

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Name Class

WBGene00040077SMapS_parentSequencecb25.fpc4224b
IdentityVersion2
NameCGC_nameCbr-nhr-20From_analysisInferred_from_orthology
Sequence_nameCBG21242
Molecular_nameCBG21242a
CBG21242a.1
CBP27113
CBG21242b
CBP44153
CBG21242b.1
Other_nameCBG_21242Accession_evidenceNDBHE600921
Public_nameCbr-nhr-20
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nhr-20
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:000000218.8721From_analysisRNASeq.briggsae.WBls:0000002.control_mean
22.0733From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
25.0454From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
9.49756From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
20.6317From_analysisRNASeq.briggsae.WBls:0000002.control_mean
23.5593From_analysisRNASeq.briggsae.WBls:0000002.control_median
25.9104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000357.4241From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
67.4875From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
77.5509From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
65.442From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
66.8057From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000447.473From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
50.6702From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
53.8674From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
43.3779From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
45.3859From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
48.484From_analysisRNASeq.briggsae.WBls:0000004.control_mean
52.3158From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.05295From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
12.0516From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.99843From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
6.03433From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.7632From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
8.21655From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.52501From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003515.9771From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.7122From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
10.9307From_analysisRNASeq.briggsae.WBls:0000038.control_mean
11.763From_analysisRNASeq.briggsae.WBls:0000038.control_median
12.8138From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
16.8981From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.29855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004112.3573From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
31.9628From_analysisRNASeq.briggsae.WBls:0000041.control_mean
36.7297From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
37.686From_analysisRNASeq.briggsae.WBls:0000041.control_median
38.6423From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
40.1219From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
14.7331From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
25.4267From_analysisRNASeq.briggsae.WBls:0000041.control_mean
25.7314From_analysisRNASeq.briggsae.WBls:0000041.control_median
9.97597From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006314.2829From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
14.9351From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
16.4662From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
18.1757From_analysisRNASeq.briggsae.WBls:0000063.control_mean
21.4753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
23.719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
18.9708From_analysisRNASeq.briggsae.WBls:0000063.control_median
19.5167From_analysisRNASeq.briggsae.WBls:0000063.control_mean
26.2219From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010116.8981From_analysisRNASeq.briggsae.total_over_all_stages.control_median
23.2925From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
20.5977From_analysisRNASeq.briggsae.total_over_all_stages.control_median
25.6213From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00143592
00143593
00143594
00143595
Ortholog (29)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-20.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG21242a
CBG21242b
Corresponding_CDS_historyCBG21242:bp194
Corresponding_transcriptCBG21242a.1
CBG21242b.1
Other_sequenceCBC14188_1
Dviv_isotig30297
JI465623.1
Experimental_infoExpr_patternExpr1051039
Microarray_resultsGPL8303_CB6_WBGene00040077_A
GPL8303_CB6_WBGene00040077_B
GPL8303_CB6_WBGene00040077_C
GPL14143_CBG21242_600-659_0.902_28_C
GPL14143_CBG21242_941-1000_0.937_2_A
GPL14143_CBG21242_1227-1286_0.916_15_B
MethodGene