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WormBase Tree Display for Gene: WBGene00040082

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Name Class

WBGene00040082SMapS_parentSequencecb25.fpc4228a
IdentityVersion2
NameCGC_nameCbr-nhr-76From_analysisInferred_from_orthology
Sequence_nameCBG21251
Molecular_nameCBG21251
CBG21251.1
CBP30991
Other_nameCBG_21251Accession_evidenceNDBHE600947
Public_nameCbr-nhr-76
DB_infoDatabaseNDBlocus_tagCBG_21251
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-nhr-76
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
AlleleWBVar00129733
WBVar00129734
WBVar00027499
RNASeq_FPKMWBls:00000022.21056From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
3.81861From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
4.22094From_analysisRNASeq.briggsae.WBls:0000002.control_mean
6.63365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.7044From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
3.7615From_analysisRNASeq.briggsae.WBls:0000002.control_median
4.0918From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.141042From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.282083From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.698694From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.293716From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.496533From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.69935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.937547From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.02961From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.27589From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
1.38917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.412725From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.48744From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.4155From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.34632From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.05322From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.46637From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.61899From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000354.28232From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000383.30276From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
3.79226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
4.1132From_analysisRNASeq.briggsae.WBls:0000038.control_median
4.43415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
4.6888From_analysisRNASeq.briggsae.WBls:0000038.control_mean
7.22603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000414.45976From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
4.53488From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
4.99508From_analysisRNASeq.briggsae.WBls:0000041.control_mean
5.00886From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.48284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
5.50282From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.64103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
4.61268From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.69048From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
4.71864From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006311.1047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
6.11418From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
8.04291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
8.07884From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
8.54392From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.37897From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
15.3699From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
8.7289From_analysisRNASeq.briggsae.WBls:0000063.control_median
9.68158From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001013.79226From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.88619From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
3.49367From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.87455From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (33)
Paralog (220)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Nuclear hormone receptor-like domain superfamily; Ligand-binding domain of nuclear hormone receptor; and Nuclear hormone receptor, ligand-binding domain. Is an ortholog of C. elegans nhr-76. In C. elegans, nhr-76 is involved in positive regulation of fatty acid beta-oxidation by octopamine signaling pathway; positive regulation of fatty acid beta-oxidation by serotonin receptor signaling pathway; and positive regulation of transcription by RNA polymerase II.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG21251
Corresponding_CDS_historyCBG21251:bp194
Corresponding_transcriptCBG21251.1
Other_sequencePT04803
Experimental_infoExpr_patternExpr1060385
Microarray_resultsGPL8303_CB6_WBGene00040082_A
GPL14143_CBG21251_196-255_0.900_16_B
GPL14143_CBG21251_399-458_0.871_31_C
GPL14143_CBG21251_699-758_0.958_1_A
MethodGene