WormBase Tree Display for Gene: WBGene00040532

WBGene00040532 SMap: S_parent: Sequence: cb25.fpc4263
  Identity: Version: 2
    Name: CGC_name: Cbr-nhr-270 From_analysis: Inferred_from_orthology
      Sequence_name: CBG21851
      Molecular_name: CBG21851
        CBG21851.1
        CBP20232
      Other_name: CBG_21851 Accession_evidence: NDB HE601531
      Public_name: Cbr-nhr-270
    DB_info: Database: NDB locus_tag CBG_21851
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:10 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 15 Oct 2007 15:19:45 WBPerson2970 Name_change: CGC_name: Cbr-nhr-270
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    RNASeq_FPKM: WBls:0000002 0.034335 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.103004 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.040023 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.045762 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.080045 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 0 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.359534 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.707967 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        1.0564 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0.349392 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.491611 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.594109 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.71361 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (11)
      WBls:0000027 0 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
            RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0.288604 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.070994 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0.123987 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.14689 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        0.17698 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        0.339587 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 0.703248 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.805789 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.895644 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.931871 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.985499 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        1.23295 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.731814 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        0.825342 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.844896 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        0.884033 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
      WBls:0000063 0.154821 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0.199558 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.336987 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.505981 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0.245904 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        0.267215 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.6055 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 0.154821 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.286267 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.222234 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.318911 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00143939
      00143940
      00143941
      00143942
    Ortholog: WBGene00020062 Caenorhabditis elegans From_analysis: OrthoMCL
            OMA
            Inparanoid_8
      WBGene00096764 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00057847 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
      WBGene00146288 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
      CSP32.g10086 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP32.g3470 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g14670 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      WBGene00223242 Brugia malayi From_analysis: WormBase-Compara
      WBGene00242085 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00288616 Trichuris muris From_analysis: WormBase-Compara
    Paralog (220)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-270. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG21851
    Corresponding_CDS_history: CBG21851:bp194
    Corresponding_transcript: CBG21851.1
  Experimental_info: Expr_pattern: Expr1065720
    Microarray_results: GPL8303_CB6_WBGene00040532_A
      GPL14143_CBG21851_730-789_0.688_111_B
      GPL14143_CBG21851_839-898_0.593_165_A
      GPL14143_CBG21851_1008-1067_0.908_1_C
  Method: Gene