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WormBase Tree Display for Gene: WBGene00040598

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Name Class

WBGene00040598SMapS_parentSequencecb25.fpc4292a
IdentityVersion2
NameCGC_nameCbr-nhr-23From_analysisInferred_from_orthology
Sequence_nameCBG21929
Molecular_nameCBG21929a
CBG21929a.1
CBP11995
CBG21929b
CBP39534
CBG21929b.1
Other_nameCBG_21929Accession_evidenceNDBHE600952
Public_nameCbr-nhr-23
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-nhr-23
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:000000218.7872From_analysisRNASeq.briggsae.WBls:0000002.control_mean
20.0047From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
26.62From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
9.73703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
23.3123From_analysisRNASeq.briggsae.WBls:0000002.control_median
23.7371From_analysisRNASeq.briggsae.WBls:0000002.control_mean
38.5866From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000315.2627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
18.6574From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
22.0522From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
18.0931From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
18.4693From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000424.4362From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
26.822From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
29.2078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
24.5931From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
24.8661From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
26.0523From_analysisRNASeq.briggsae.WBls:0000004.control_mean
27.1585From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.02135From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.63767From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.46348From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.73143From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.50022From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.36276From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
3.4383From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003536.219From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.0669From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
16.4611From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
17.7665From_analysisRNASeq.briggsae.WBls:0000038.control_median
19.0718From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
20.1539From_analysisRNASeq.briggsae.WBls:0000038.control_mean
33.0158From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004145.794From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
46.4011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
46.5919From_analysisRNASeq.briggsae.WBls:0000041.control_median
46.7826From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
52.7494From_analysisRNASeq.briggsae.WBls:0000041.control_mean
72.0199From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
48.7414From_analysisRNASeq.briggsae.WBls:0000041.control_median
50.7002From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
55.0544From_analysisRNASeq.briggsae.WBls:0000041.control_mean
68.6284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006335.4898From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
35.6215From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
38.7257From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
39.9917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
40.8413From_analysisRNASeq.briggsae.WBls:0000063.control_mean
54.3779From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
18.6576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
37.144From_analysisRNASeq.briggsae.WBls:0000063.control_mean
37.1736From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010124.4362From_analysisRNASeq.briggsae.total_over_all_stages.control_median
25.9379From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
24.7296From_analysisRNASeq.briggsae.total_over_all_stages.control_median
27.0222From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00144010
00144011
00144012
00144013
Ortholog (34)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-23. In C. elegans, nhr-23 is involved in several processes, including defense response to Gram-negative bacterium; positive regulation of transcription by RNA polymerase II; and spermatogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG21929a
CBG21929b
Corresponding_CDS_historyCBG21929:bp194
Corresponding_transcriptCBG21929a.1
CBG21929b.1
Other_sequence (24)
Experimental_infoExpr_patternExpr1064126
Microarray_resultsGPL8303_CB6_WBGene00040598_A
GPL8303_CB6_WBGene00040598_B
GPL14143_CBG21929_481-540_0.760_13_A
GPL14143_CBG21929_581-640_0.730_33_B
GPL14143_CBG21929_691-750_0.766_10_C
MethodGene