WormBase Tree Display for Gene: WBGene00040649

WBGene00040649 SMap: S_parent: Sequence: cb25.fpc4308
  Identity: Version: 6
    Name: CGC_name: Cbr-nhr-247.1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG21997
      Molecular_name: CBG21997
        CBG21997.1
        CBP20284
      Other_name: CBG_21997 Accession_evidence: NDB HE601317
      Public_name: Cbr-nhr-247.1
    DB_info: Database: NDB locus_tag CBG_21997
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:10 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cbr-nhr-242.1
        3 08 Feb 2019 15:42:27 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:27 WBPerson1983 Name_change: CGC_name: Cbr-nhr-242.1
        5 27 Nov 2019 12:48:15 WBPerson1983 Name_change: CGC_name: Removed
        6 04 Feb 2020 15:43:57 WBPerson1983 Name_change: CGC_name: Cbr-nhr-247.1
        7 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        8 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cbr-nhr-242.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    RNASeq_FPKM: WBls:0000002 0.528217 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.539206 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.658692 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.908652 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.574353 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.609499 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.646393 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.009439 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.047194 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 0 From_analysis (12)
      WBls:0000027 0 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
            RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0.042295 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.12485 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0.136222 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        0.142052 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.159253 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        0.260785 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 0.030457 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.036474 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.042491 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.047846 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.118436 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.068095 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.074839 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.107187 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        0.11 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.018076 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.090379 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.020933 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.035219 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 0.098104 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.098793 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00144035
      00144036
      00144037
      00144038
    Ortholog (27)
    Paralog (220)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-242 and nhr-247. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG21997
    Corresponding_transcript: CBG21997.1
  Experimental_info: Expr_pattern: Expr1060706
    Microarray_results: GPL8303_CB6_WBGene00040649_A
      GPL8303_CB6_WBGene00040649_B
      GPL14143_CBG21997_971-1030_0.950_1_A
      GPL14143_CBG21997_975-1034_0.929_3_C
      GPL14143_CBG21997_1036-1095_0.945_2_B
  Remark: [190208 pad] The CGC name Cbr-nhr-242.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [191127 pad] The CGC name Cbr-nhr-242.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Cbr-nhr-247.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene