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WormBase Tree Display for Gene: WBGene00040908

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Name Class

WBGene00040908SMapS_parentSequencecb25.fpc4331
IdentityVersion2
NameCGC_nameCbr-pin-2From_analysisInferred_from_orthology
Sequence_nameCBG22312
Molecular_nameCBG22312
CBG22312.1
CBP33958
Other_nameCBG_22312Accession_evidenceNDBHE601241
Public_nameCbr-pin-2
DB_infoDatabaseNDBlocus_tagCBG_22312
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-pin-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpin
AlleleWBVar00139866
WBVar00139867
WBVar00139868
WBVar00003969
RNASeq_FPKMWBls:00000020.885618From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.06859From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.19668From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.63582From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.68679From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.87769From_analysisRNASeq.briggsae.WBls:0000002.control_median
2.06921From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000031.00096From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
1.10248From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.204From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.734987From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000043.05224From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
4.37174From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
5.69123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
2.96011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
3.17014From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
3.3706From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
3.64886From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000270.273187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.32431From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.2753From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.2284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.99523From_analysisRNASeq.briggsae.WBls:0000027.control_median
2.62301From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.66616From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000352.94414From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.069746From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.96243From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.62021From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.71991From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.27799From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
5.56948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.687685From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.69703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.92154From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.14605From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.40283From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.08056From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.11331From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.18812From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.7086From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
3.80879From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000631.09011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.47769From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.55859From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.16731From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.5653From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
4.14487From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
1.44265From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
1.51814From_analysisRNASeq.briggsae.WBls:0000063.control_median
2.04654From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001011.96243From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.34197From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.31695From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.41397From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (26)
ParalogWBGene00035121Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Zinc finger, LIM-type; LIM domain; and LIM and senescent cell antigen-like-containing domain protein 1-like. Is an ortholog of C. elegans pin-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG22312
Corresponding_CDS_historyCBG22312:bp194
Corresponding_transcriptCBG22312.1
Other_sequenceEX011602.1
HBC22718_1
Hbac_isotig03924
Experimental_infoExpr_patternExpr1064128
Microarray_resultsGPL8303_CB6_WBGene00040908_A
GPL8303_CB6_WBGene00040908_B
GPL14143_CBG22312_549-608_0.924_8_C
GPL14143_CBG22312_762-821_0.938_2_B
GPL14143_CBG22312_836-895_0.950_1_A
MethodGene