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WormBase Tree Display for Gene: WBGene00041334

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Name Class

WBGene00041334SMapS_parentSequencecb25.fpc4426a
IdentityVersion1
NameSequence_nameCBG22872
Molecular_nameCBG22872
CBG22872.1
CBP38660
Other_nameCBG_22872Accession_evidenceNDBHE600994
Public_nameCBG22872
DB_infoDatabaseNDBlocus_tagCBG_22872
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:11WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00140044
WBVar00140043
RNASeq_FPKMWBls:00000021.76278From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
2.09214From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.1255From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.38813From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.24587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.88057From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.94414From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.303135From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.439516From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.575896From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0.808494From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.54645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000042.56846From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
3.32415From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
4.07983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1.88968From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.97384From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
2.76639From_analysisRNASeq.briggsae.WBls:0000004.control_mean
3.32012From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.19903From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.335202From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.76563From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.76265From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.54893From_analysisRNASeq.briggsae.WBls:0000027.control_median
2.66374From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.35808From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000352.25853From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.128408From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.06459From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.35792From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2.55993From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.05526From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.18344From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.949793From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.37529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.4058From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.43631From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.48401From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.17463From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.80547From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.95642From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.57743From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.22504From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.513271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.69477From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.815898From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.01382From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.13086From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.743453From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.901384From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.986871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001011.76278From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.37606From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.93176From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.3955From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00144519
00144520
00144521
00144522
Ortholog (34)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-102.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG22872
Corresponding_CDS_historyCBG22872:bp194
CBG22872:bp255
Corresponding_transcriptCBG22872.1
Other_sequenceJI470651.1
JI477884.1
Experimental_infoExpr_patternExpr1052482
Microarray_resultsGPL8303_CB6_WBGene00041334_A
GPL8303_CB6_WBGene00041334_B
GPL14143_CBG22872_557-616_0.852_6_C
GPL14143_CBG22872_767-826_0.919_2_B
GPL14143_CBG22872_925-984_0.951_1_A
MethodGene