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WormBase Tree Display for Gene: WBGene00041335

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Name Class

WBGene00041335SMapS_parentSequencecb25.fpc4426a
IdentityVersion2
NameCGC_nameCbr-nhr-84From_analysisInferred_from_orthology
Sequence_nameCBG22874
Molecular_nameCBG22874
CBG22874.1
CBP05463
Other_nameCBG_22874Accession_evidenceNDBHE600994
Public_nameCbr-nhr-84
DB_infoDatabaseNDBlocus_tagCBG_22874
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:11WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nhr-84
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:00000023.18931From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
5.32076From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.96653From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
6.80643From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
4.06975From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
5.00801From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.01814From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000032.84132From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.2111From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
3.58087From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
3.39538From_analysisRNASeq.briggsae.WBls:0000003.control_mean
3.76395From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000046.09462From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
6.6775From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
7.26038From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
7.52109From_analysisRNASeq.briggsae.WBls:0000004.control_mean
7.80078From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
8.17746From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
8.27219From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.636385From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
14.5821From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.61889From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.61246From_analysisRNASeq.briggsae.WBls:0000027.control_mean
22.4891From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
8.1005From_analysisRNASeq.briggsae.WBls:0000027.control_median
9.83162From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000355.81541From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.557052From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
10.9657From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
14.459From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
5.13125From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
7.77825From_analysisRNASeq.briggsae.WBls:0000038.control_mean
8.04848From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:00000412.86045From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
3.10168From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.15651From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.21133From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.82543From_analysisRNASeq.briggsae.WBls:0000041.control_mean
6.12826From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.60777From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.00422From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
4.02704From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.85628From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.36041From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
2.66015From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.99299From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.55677From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
4.3906From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.67914From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.77406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
2.88352From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001014.3906From_analysisRNASeq.briggsae.total_over_all_stages.control_median
6.54436From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
4.62344From_analysisRNASeq.briggsae.total_over_all_stages.control_median
6.73669From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00144523
00144524
00144525
00144526
Ortholog (26)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-84.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG22874
Corresponding_CDS_historyCBG22874:bp194
CBG22874:bp255
Corresponding_transcriptCBG22874.1
Other_sequenceCJC07354_1
JI169947.1
JI170999.1
FE910395.1
JI177820.1
ASC36302_1
Experimental_infoExpr_patternExpr1052585
Microarray_resultsGPL8303_CB6_WBGene00041335_A
GPL8303_CB6_WBGene00041335_B
GPL14143_CBG22874_726-785_0.912_14_C
GPL14143_CBG22874_929-988_0.926_7_A
GPL14143_CBG22874_1023-1082_0.956_3_B
MethodGene