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WormBase Tree Display for Gene: WBGene00041700

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Name Class

WBGene00041700SMapS_parentSequencecb25.fpc4470
IdentityVersion2
NameCGC_nameCbr-sma-1From_analysisInferred_from_orthology
Sequence_nameCBG23326
Molecular_nameCBG23326a
CBG23326a.1
CBP45186
CBG23326b
CBP38932
CBG23326b.1
Other_nameCBG_23326Accession_evidenceNDBHE601533
Public_nameCbr-sma-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:11WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-sma-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsma
AlleleWBVar00027144
WBVar00000745
WBVar00132972
RNASeq_FPKMWBls:000000218.8063From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
23.3601From_analysisRNASeq.briggsae.WBls:0000002.control_mean
25.5965From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
25.6775From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
25.637From_analysisRNASeq.briggsae.WBls:0000002.control_median
28.8611From_analysisRNASeq.briggsae.WBls:0000002.control_mean
45.3641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000331.146From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
32.7079From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
34.2697From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
33.4244From_analysisRNASeq.briggsae.WBls:0000003.control_mean
34.8576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000464.6261From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
65.4531From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
66.2802From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
62.9103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
63.8503From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
68.7953From_analysisRNASeq.briggsae.WBls:0000004.control_mean
86.3095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002713.3956From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
18.7626From_analysisRNASeq.briggsae.WBls:0000027.control_mean
37.4227From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.46937From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
21.7771From_analysisRNASeq.briggsae.WBls:0000027.control_mean
22.1082From_analysisRNASeq.briggsae.WBls:0000027.control_median
30.8208From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003527.0402From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003824.2083From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
25.3925From_analysisRNASeq.briggsae.WBls:0000038.control_mean
27.1507From_analysisRNASeq.briggsae.WBls:0000038.control_median
30.0932From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
38.7192From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
8.54921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004149.8476From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
76.8401From_analysisRNASeq.briggsae.WBls:0000041.control_mean
77.1578From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
82.3382From_analysisRNASeq.briggsae.WBls:0000041.control_median
87.5187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
92.8365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
43.6125From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
68.5924From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
69.9276From_analysisRNASeq.briggsae.WBls:0000041.control_mean
72.8751From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
36.7867From_analysisRNASeq.briggsae.WBls:0000063.control_mean
45.2583From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
45.2738From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
45.528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
47.8733From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
20.3693From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
34.0504From_analysisRNASeq.briggsae.WBls:0000063.control_mean
45.266From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:000010130.0932From_analysisRNASeq.briggsae.total_over_all_stages.control_median
35.5358From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
34.5636From_analysisRNASeq.briggsae.total_over_all_stages.control_median
39.1375From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00144932
Ortholog (37)
ParalogWBGene00038321Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00031908Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033177Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034737Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035945Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036178Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036548Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040033Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040886Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041850Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable phospholipid binding activity. Is an ortholog of C. elegans sma-1. In C. elegans, sma-1 is involved in several processes, including pharyngeal gland morphogenesis; positive regulation of organ growth; and regulation of anatomical structure size.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG23326a
CBG23326b
Corresponding_CDS_historyCBG23326:bp194
CBG23326:bp255
Corresponding_transcriptCBG23326a.1
CBG23326b.1
Other_sequence (72)
Experimental_infoExpr_patternExpr1056753
Microarray_resultsGPL8303_CB6_WBGene00041700_A
GPL8303_CB6_WBGene00041700_B
GPL14143_CBG23326_4444-4503_0.754_746_C
GPL14143_CBG23326_5323-5382_0.786_291_B
GPL14143_CBG23326_9308-9367_0.766_561_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene