WormBase Tree Display for Gene: WBGene00041981

WBGene00041981 SMap: S_parent: Sequence: cb25.NA_031
  Identity: Version: 5
    Name: CGC_name: Cbr-nhr-65 From_analysis: Inferred_from_orthology
      Sequence_name: CBG23697
      Molecular_name: CBG23697
        CBG23697.1
        CBP38715
      Other_name: CBG_23697 Accession_evidence: NDB HE601102
      Public_name: Cbr-nhr-65
    DB_info: Database: NDB locus_tag CBG_23697
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:11 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 24 Jul 2008 11:56:43 WBPerson1847 Event: Acquires_merge: WBGene00041982
        3 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cbr-nhr-65
        4 08 Feb 2019 15:42:29 WBPerson1983 Name_change: CGC_name: Removed
        5 08 May 2019 10:09:24 WBPerson1983 Name_change: CGC_name: Cbr-nhr-65
        6 28 May 2021 19:05:21 WBPerson1983 Name_change: CGC_name: Removed
        7 28 Jul 2021 11:12:28 WBPerson1983 Name_change: CGC_name: Cbr-nhr-65
      Acquires_merge: WBGene00041982
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele: WBVar00133255
      WBVar00133250
      WBVar00047602
      WBVar00133251
      WBVar00133252
      WBVar00133253
      WBVar00053344
      WBVar00133254
    RNASeq_FPKM: WBls:0000002 1.36746 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        1.78396 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        2.65797 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        4.82248 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        1.28746 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        1.57571 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        2.31534 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.283667 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.551639 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.819611 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        0.729929 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        1.08651 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 1.23681 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        1.6568 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        2.07678 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        1.15464 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        1.67148 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        1.87927 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        2.00992 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 0.119455 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.708145 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        1.52201 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        3.73842 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        1.29489 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        1.61191 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.88164 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 1.65901 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.456903 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        1.34673 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        2.1179 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        2.88908 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        3.08977 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        7.66638 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 1.21957 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        1.51196 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        1.54772 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        1.58349 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        2.28099 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        4.80895 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        3.19622 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        3.62629 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        5.40605 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        7.22771 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        2.36868 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        2.71399 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        2.86146 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        2.89826 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        3.36969 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        1.5903 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        2.23895 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        2.78772 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 1.65901 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.1994 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        1.72149 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.29753 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00145223
      00145224
      00145225
      00145226
    Ortholog (18)
    Paralog (220)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-65. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG23697
    Corresponding_CDS_history: CBG23697:bp194
      CBG23697:bp255
    Corresponding_transcript: CBG23697.1
    Other_sequence: MP01935
  Experimental_info: Expr_pattern: Expr1054870
    Microarray_results: GPL8303_CB6_WBGene00041981_A
      GPL8303_CB6_WBGene00041981_B
      GPL14143_CBG23697_167-226_0.890_3_C
      GPL14143_CBG23697_529-588_0.932_2_B
      GPL14143_CBG23697_597-656_0.935_1_A
  Remark: [190208 pad] The CGC name Cbr-nhr-65 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Cbr-nhr-65 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene