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WormBase Tree Display for Gene: WBGene00042281

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Name Class

WBGene00042281SMapS_parentSequencecb25.NA_094
IdentityVersion2
NameCGC_nameCbr-nhr-19From_analysisInferred_from_orthology
Sequence_nameCBG24087
Molecular_nameCBG24087
CBG24087.1
CBP42354
Other_nameCBG_24087Accession_evidenceNDBHE601457
Public_nameCbr-nhr-19
DB_infoDatabaseNDBlocus_tagCBG_24087
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:12WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nhr-19
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
AlleleWBVar00054704
WBVar00054709
RNASeq_FPKMWBls:000000220.4445From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
39.1899From_analysisRNASeq.briggsae.WBls:0000002.control_mean
44.0756From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
53.0496From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
18.4647From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
32.2601From_analysisRNASeq.briggsae.WBls:0000002.control_median
34.0086From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000039.04251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
9.47881From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
9.91511From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
7.74263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
8.90008From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000411.0562From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
12.2424From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
13.4286From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
10.9853From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
11.7067From_analysisRNASeq.briggsae.WBls:0000004.control_mean
13.5387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
9.52474From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002718.2099From_analysisRNASeq.briggsae.WBls:0000027.control_mean
20.9844From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
27.1879From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.45729From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
112.275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
24.0861From_analysisRNASeq.briggsae.WBls:0000027.control_median
41.7262From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003530.8294From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.2624From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
27.7188From_analysisRNASeq.briggsae.WBls:0000038.control_median
33.9083From_analysisRNASeq.briggsae.WBls:0000038.control_mean
4.18336From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
43.1753From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
76.012From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004111.7923From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.62352From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
7.9134From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
7.94729From_analysisRNASeq.briggsae.WBls:0000041.control_median
7.98118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
8.3276From_analysisRNASeq.briggsae.WBls:0000041.control_mean
10.8386From_analysisRNASeq.briggsae.WBls:0000041.control_mean
12.7328From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
18.9885From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
9.88674From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000632.66589From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
3.26291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
4.19403From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.3875From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
5.15872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
5.49514From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
11.4375From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
4.77311From_analysisRNASeq.briggsae.WBls:0000063.control_median
5.40128From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010111.7923From_analysisRNASeq.briggsae.total_over_all_stages.control_median
26.6471From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
12.0274From_analysisRNASeq.briggsae.total_over_all_stages.control_median
26.012From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00145436
00145437
00145438
00145439
Ortholog (28)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-19.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG24087
Corresponding_CDS_historyCBG24087:bp194
CBG24087:bp255
Corresponding_transcriptCBG24087.1
Other_sequence (27)
Experimental_infoExpr_patternExpr1054054
Microarray_resultsGPL8303_CB6_WBGene00042281_A
GPL14143_CBG24087_733-792_0.907_16_C
GPL14143_CBG24087_815-874_0.927_6_B
GPL14143_CBG24087_945-1004_0.943_2_A
MethodGene