WormBase Tree Display for Gene: WBGene00044689
expand all nodes | collapse all nodes | view schema
| WBGene00044689 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | arid-1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y108G3AL.7 | ||||||||
| Molecular_name (27) | |||||||||
| Other_name | CELE_Y108G3AL.7 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | arid-1 | ||||||||
| DB_info | Database | AceView | gene | 5A677 | |||||
| WormFlux | gene | WBGene00044689 | |||||||
| NDB | locus_tag | CELE_Y108G3AL.7 | |||||||
| Panther | gene | CAEEL|WormBase=Y108G3AL.7b|UniProtKB=A0A0K3AXH1 | |||||||
| family | PTHR13964 | ||||||||
| NCBI | gene | 4363100 | |||||||
| RefSeq | protein | NM_001313081.3 | |||||||
| NM_001313080.3 | |||||||||
| NM_001313076.3 | |||||||||
| NM_001313289.3 | |||||||||
| NM_001313078.3 | |||||||||
| NM_001313075.3 | |||||||||
| NM_001047716.4 | |||||||||
| NM_001313077.3 | |||||||||
| NM_001313079.3 | |||||||||
| SwissProt | UniProtAcc | A0A0K3AXH1 | |||||||
| UniProt_GCRP | UniProtAcc | A0A0K3AXH1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 01 Dec 2005 09:15:23 | WBPerson1867 | Event | Created | |||
| 2 | 19 Dec 2005 16:21:34 | WBPerson1867 | Event | Acquires_merge | WBGene00017081 | ||||
| 3 | 22 Sep 2011 11:35:55 | WBPerson2970 | Name_change | CGC_name | arid-1 | ||||
| Acquires_merge | WBGene00017081 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | arid | ||||||||
| Allele (299) | |||||||||
| Strain | WBStrain00033865 | ||||||||
| WBStrain00050497 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP5588 | ||||||||
| Ortholog (45) | |||||||||
| Structured_description | Automated_description | Predicted to enable transcription cis-regulatory region binding activity. Acts upstream of or within ERAD pathway and defense response to other organism. Predicted to be located in nucleus. Predicted to be part of transcription repressor complex. Is an ortholog of human ARID4A (AT-rich interaction domain 4A). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y108G3AL.7a | |||||||
| Y108G3AL.7b | |||||||||
| Y108G3AL.7c | |||||||||
| Y108G3AL.7d | |||||||||
| Y108G3AL.7e | |||||||||
| Y108G3AL.7f | |||||||||
| Y108G3AL.7g | |||||||||
| Y108G3AL.7h | |||||||||
| Y108G3AL.7i | |||||||||
| Corresponding_CDS_history | Y108G3AL.7:wp208 | ||||||||
| Y108G3AL.7:wp225 | |||||||||
| Corresponding_transcript | Y108G3AL.7a.1 | ||||||||
| Y108G3AL.7b.1 | |||||||||
| Y108G3AL.7c.1 | |||||||||
| Y108G3AL.7d.1 | |||||||||
| Y108G3AL.7e.1 | |||||||||
| Y108G3AL.7f.1 | |||||||||
| Y108G3AL.7g.1 | |||||||||
| Y108G3AL.7h.1 | |||||||||
| Y108G3AL.7i.1 | |||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf661000 | ||||||||
| WBsf999095 | |||||||||
| WBsf231309 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043539 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00012614 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062183 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030437 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055290 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026478 | ||||||||
| Expr1040301 | |||||||||
| Expr1158826 | |||||||||
| Expr2009397 | |||||||||
| Expr2027633 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (141) | |||||||||
| Interaction | WBInteraction000138710 | ||||||||
| WBInteraction000197264 | |||||||||
| WBInteraction000204213 | |||||||||
| WBInteraction000214229 | |||||||||
| WBInteraction000261407 | |||||||||
| WBInteraction000297440 | |||||||||
| WBInteraction000354985 | |||||||||
| WBInteraction000438928 | |||||||||
| WBInteraction000575048 | |||||||||
| Map_info | Map | V | Position | -20.0101 | Error | 7.5e-05 | |||
| Positive | Positive_clone | Y108G3AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055424 | |||||||||
| WBPaper00061738 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
