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WormBase Tree Display for Gene: WBGene00051990

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Name Class

WBGene00051990SMapS_parentSequenceCrem_Contig0
IdentityVersion3
NameCGC_nameCre-unc-78From_analysisInferred_from_orthology
Sequence_nameCRE00406
Molecular_nameCRE00406
CRE00406.1
RP33104
Other_namecr01.sctg0.wum.972
Public_nameCre-unc-78
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:25WBPerson1847EventCreated
229 Nov 2007 17:00:48WBPerson2970Name_changeCGC_nameCre-unc-78
303 Jul 2008 11:44:29WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE00406
Other_namecr01.sctg0.wum.972
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:000000410.7685From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
10.9005From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
11.0326From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (53)
WBls:000002719.7116From_analysisRNASeq.remanei.WBls:0000027.control_mean
21.8967From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
22.9471From_analysisRNASeq.remanei.WBls:0000027.control_median
23.9974From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
25.6078From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
7.34463From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003813.8241From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
32.6855From_analysisRNASeq.remanei.WBls:0000038.control_mean
40.9918From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
43.2406From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:000004114.4383From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
14.4722From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
15.2529From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
19.7538From_analysisRNASeq.remanei.WBls:0000041.control_median
19.9434From_analysisRNASeq.remanei.WBls:0000041.control_mean
24.2547From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
25.058From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
26.1842From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
WBls:0000063 (12)
WBls:000010119.6691From_analysisRNASeq.remanei.total_over_all_stages.control_mean
21.0699From_analysisRNASeq.remanei.total_over_all_stages.control_median
Ortholog (39)
ParalogWBGene00067947Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Anaphase-promoting complex subunit 4, WD40 domain; WD domain, G-beta repeat; Anaphase-promoting complex subunit 4 WD40 domain; Quinoprotein alcohol dehydrogenase-like superfamily; WD40-repeat-containing domain superfamily; G-protein beta WD-40 repeat; WD40/YVTN repeat-like-containing domain superfamily; and WD40 repeat. Is an ortholog of C. elegans unc-78. In C. elegans, unc-78 is involved in several processes, including myofibril assembly; regulation of actin polymerization or depolymerization; and regulation of locomotion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE00406
Corresponding_transcriptCRE00406.1
Other_sequence (47)
Experimental_infoExpr_patternExpr1111990
Microarray_resultsGPL14146_CRE00406_1455-1514_0.935_5_C
GPL14146_CRE00406_1701-1760_0.943_2_B
GPL14146_CRE00406_1865-1924_0.961_1_A
MethodGene