WormBase Tree Display for Gene: WBGene00054295

WBGene00054295 SMap: S_parent: Sequence: Crem_Contig6
  Identity: Version: 5
    Name: CGC_name: Cre-cth-1 From_analysis: Inferred_from_orthology
      Sequence_name: CRE26159
      Molecular_name: CRE26159
        CRE26159.1
        RP35844
      Other_name: cr01.sctg3.wum.302
      Public_name: Cre-cth-1
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 03 Jul 2008 11:44:49 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE26159
                Other_name: cr01.sctg3.wum.302
        3 08 May 2019 10:09:23 WBPerson1983 Name_change: CGC_name: Cre-cth-1
        4 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        5 28 Jul 2021 11:12:28 WBPerson1983 Name_change: CGC_name: Cre-cth-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cth
    RNASeq_FPKM: WBls:0000004 0.734251 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        0.882465 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        1.03068 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 31.3851 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        32.5878 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        33.7905 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        36.6651 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        72.5486 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        8.93636 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 14.6575 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        51.6959 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        65.6066 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        74.8235 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 132.546 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        142.464 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        219.905 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        251.389 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        27.6753 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        279.659 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        30.9703 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        45.1866 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
      WBls:0000063 (12)
      WBls:0000101 39.0695 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        70.1568 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00149621
      00149622
    Ortholog (28)
    Paralog: WBGene00054249 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00075890 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00060944 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to enable pyridoxal phosphate binding activity. Predicted to be involved in transsulfuration. Is an ortholog of C. elegans cth-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE26159
    Corresponding_transcript: CRE26159.1
    Other_sequence (31)
  Experimental_info: Expr_pattern: Expr1108842
    Microarray_results: GPL14146_CRE26159_1102-1161_0.788_134_B
      GPL14146_CRE26159_860-919_0.940_2_C
      GPL14146_CRE26159_979-1038_0.942_1_A
  Remark: [210528 pad] The CGC name Cre-cth-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene