WormBase Tree Display for Gene: WBGene00055268

WBGene00055268 SMap: S_parent: Sequence: Crem_Contig239
  Identity: Version: 3
    Name: CGC_name: Cre-lin-12 From_analysis: Inferred_from_orthology
      Sequence_name: CRE29199
      Molecular_name: CRE29199
        CRE29199.1
        RP27900
      Other_name: cr01.sctg4.wum.613
      Public_name: Cre-lin-12
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 03 Jul 2008 11:44:55 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE29199
                Other_name: cr01.sctg4.wum.613
        3 04 Jul 2008 11:06:36 WBPerson4055 Name_change: CGC_name: Cre-lin-12
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lin
    RNASeq_FPKM: WBls:0000004 13.282 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        14.2189 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        15.1558 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 0.441278 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        1.02129 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        2.43983 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        2.53016 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        3.85837 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        4.79971 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 0.645419 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        2.95764 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        3.46181 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        4.76568 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 1.36142 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        1.48325 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        2.01395 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        2.18923 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        2.28156 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        2.54917 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        2.76277 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        2.96484 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
      WBls:0000063 (12)
      WBls:0000101 1.42234 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        2.73515 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00150654
      00150655
      00150656
      00150657
      00150658
    Ortholog (18)
    Paralog: WBGene00055276 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00070126 Caenorhabditis remanei From_analysis: TreeFam
            GeneACeDB-Compara
      WBGene00069671 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00057869 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
      WBGene00058536 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
      WBGene00066952 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
      WBGene00069674 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
      WBGene00069676 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
      WBGene00082138 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
      WBGene00083843 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to enable calcium ion binding activity. Predicted to be involved in Notch signaling pathway and cell differentiation. Predicted to be located in membrane. Is an ortholog of C. elegans lin-12. In C. elegans, lin-12 is involved in several processes, including egg-laying behavior; nematode larval development; and positive regulation of mesodermal cell fate specification. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE29199
    Corresponding_transcript: CRE29199.1
    Other_sequence: CBC12434_1
      JI471802.1
      JI164309.1
  Experimental_info: Expr_pattern: Expr1095323
    Microarray_results: GPL14146_CRE29199_2221-2280_0.872_40_A
      GPL14146_CRE29199_2515-2574_0.888_29_B
      GPL14146_CRE29199_2981-3040_0.876_38_C
  Method: Gene