WormBase Tree Display for Gene: WBGene00055510

WBGene00055510 SMap: S_parent: Sequence: Crem_Contig256
  Identity: Version: 3
    Name: CGC_name: Cre-ift-139 From_analysis: Inferred_from_orthology
      Sequence_name: CRE08582
      Molecular_name: CRE08582
        CRE08582.1
        RP38790
      Other_name: cr01.sctg5.wum.230
      Public_name: Cre-ift-139
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 03 Jul 2008 11:44:57 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE08582
                Other_name: cr01.sctg5.wum.230
        3 31 May 2017 14:28:06 WBPerson2970 Name_change: CGC_name: Cre-ift-139
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ift
    RNASeq_FPKM: WBls:0000004 0.48828 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        0.651129 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        0.813979 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 (53)
      WBls:0000027 0.0619 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        1.45201 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        1.67603 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        1.80553 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        2.15906 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        3.03113 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 0.528143 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        0.617113 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        0.967315 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
      WBls:0000041 0.066514 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        0.081713 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        0.096418 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        0.174729 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        0.228506 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        0.25304 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        0.261175 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        0.612174 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
      WBls:0000063 0.051467 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        0.17182 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        0.342851 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
            RNASeq.remanei.WBls:0000063.control_median
      WBls:0000101 0.089065 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        0.441404 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog (38)
    Paralog: WBGene00081927 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Tetratricopeptide-like helical domain superfamily; Tetratricopeptide repeat protein 21A/21B; and Tetratricopeptide repeat. Is an ortholog of C. elegans ift-139. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE08582
    Corresponding_transcript: CRE08582.1
    Other_sequence: JI168065.1
  Experimental_info: Expr_pattern: Expr1112546
    Microarray_results: GPL14146_CRE08582_2355-2414_0.926_2_B
      GPL14146_CRE08582_2545-2604_0.922_3_C
      GPL14146_CRE08582_2550-2609_0.961_1_A
  Reference: WBPaper00063946
  Method: Gene