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WormBase Tree Display for Gene: WBGene00058342

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Name Class

WBGene00058342SMapS_parentSequenceCrem_Contig15
IdentityVersion3
NameCGC_nameCre-alr-1From_analysisInferred_from_orthology
Sequence_nameCRE07467
Molecular_nameCRE07467
CRE07467.1
RP13428
Other_namecr01.sctg11.wum.181
Public_nameCre-alr-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
203 Jul 2008 11:45:17WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE07467
Other_namecr01.sctg11.wum.181
304 Jul 2008 11:06:38WBPerson4055Name_changeCGC_nameCre-alr-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classalr
RNASeq_FPKMWBls:00000045.33295From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
6.15211From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
6.97128From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:000002711.1249From_analysisRNASeq.remanei.WBls:0000027.control_mean
1.13294From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
11.3883From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
13.3466From_analysisRNASeq.remanei.WBls:0000027.control_median
15.3049From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
16.6734From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
WBls:00000381.49135From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
4.95807From_analysisRNASeq.remanei.WBls:0000038.control_mean
5.91048From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
RNASeq.remanei.WBls:0000038.control_median
7.47237From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
WBls:00000410.704657From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
0.789922From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
0.821128From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
1.92166From_analysisRNASeq.remanei.WBls:0000041.control_median
2.11357From_analysisRNASeq.remanei.WBls:0000041.control_mean
3.0222From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
3.47961From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
3.86389From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
WBls:0000063 (12)
WBls:00001012.71408From_analysisRNASeq.remanei.total_over_all_stages.control_median
4.12049From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00153763
Ortholog (29)
Paralog (22)
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Is an ortholog of C. elegans alr-1. In C. elegans, alr-1 is involved in several processes, including amphid sensory organ development; epidermis morphogenesis; and sensory perception of touch.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE07467
Corresponding_transcriptCRE07467.1
Other_sequenceJI170726.1
CJC16419_1
AYC03228_1
AE04324
CRC04889_1
CR09896
Experimental_infoExpr_patternExpr1108758
Microarray_resultsGPL14146_CRE07467_357-416_0.910_39_A
GPL14146_CRE07467_513-572_0.726_133_B
GPL14146_CRE07467_962-1021_0.954_4_C
MethodGene