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WormBase Tree Display for Gene: WBGene00062053

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Name Class

WBGene00062053SMapS_parentSequenceCrem_Contig3
IdentityVersion3
NameCGC_nameCre-smk-1From_analysisInferred_from_orthology
Sequence_nameCRE18762
Molecular_nameCRE18762
CRE18762.1
RP35812
Other_namecr01.sctg29.wum.21
Public_nameCre-smk-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:27WBPerson1847EventCreated
229 Nov 2007 17:00:48WBPerson2970Name_changeCGC_nameCre-smk-1
303 Jul 2008 11:45:42WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE18762
Other_namecr01.sctg29.wum.21
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsmk
RNASeq_FPKMWBls:0000004177.996From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
186.385From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
194.773From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:000002710.034From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
49.1746From_analysisRNASeq.remanei.WBls:0000027.control_mean
49.8007From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
56.9533From_analysisRNASeq.remanei.WBls:0000027.control_median
64.1058From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
72.7578From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
WBls:000003829.0245From_analysisRNASeq.remanei.WBls:0000038.control_mean
35.3518From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
42.1506From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
9.57126From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:0000041104.403From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
107.801From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
109.678From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
39.0819From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
40.8383From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
44.6907From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
74.4155From_analysisRNASeq.remanei.WBls:0000041.control_mean
74.5469From_analysisRNASeq.remanei.WBls:0000041.control_median
WBls:0000063 (12)
WBls:000010138.967From_analysisRNASeq.remanei.total_over_all_stages.control_median
55.0381From_analysisRNASeq.remanei.total_over_all_stages.control_mean
Ortholog (31)
ParalogWBGene00082505Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: PH-like domain superfamily; Phosphatase 4 regulatory subunit 3; Domain of unknown function DUF625; and Armadillo-type fold. Is an ortholog of C. elegans smk-1. In C. elegans, smk-1 is involved in several processes, including defense response to bacterium; negative regulation of mitotic DNA damage checkpoint; and response to radiation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE18762
Corresponding_transcriptCRE18762.1
Other_sequence (28)
Experimental_infoExpr_patternExpr1112696
Microarray_resultsGPL14146_CRE18762_1872-1931_0.916_17_B
GPL14146_CRE18762_2044-2103_0.885_35_A
GPL14146_CRE18762_2561-2620_0.969_2_C
MethodGene