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WormBase Tree Display for Gene: WBGene00063003

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Name Class

WBGene00063003SMapS_parentSequenceCrem_Contig40
IdentityVersion3
NameCGC_nameCre-ccf-1From_analysisInferred_from_orthology
Sequence_nameCRE00984
Molecular_nameCRE00984
CRE00984.1
RP38349
Other_namecr01.sctg35.wum.49
Public_nameCre-ccf-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:27WBPerson1847EventCreated
229 Nov 2007 17:00:45WBPerson2970Name_changeCGC_nameCre-ccf-1
303 Jul 2008 11:45:49WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE00984
Other_namecr01.sctg35.wum.49
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classccf
RNASeq_FPKMWBls:0000004124.085From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
129.413From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
134.74From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:000002722.4379From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
22.6125From_analysisRNASeq.remanei.WBls:0000027.control_mean
25.3473From_analysisRNASeq.remanei.WBls:0000027.control_median
28.2567From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
34.5856From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
5.16975From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003811.439From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
28.7726From_analysisRNASeq.remanei.WBls:0000038.control_mean
32.8273From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
42.0515From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:0000041112.716From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
117.648From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
124.797From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
39.9901From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
43.8767From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
46.3841From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
79.55From_analysisRNASeq.remanei.WBls:0000041.control_median
80.902From_analysisRNASeq.remanei.WBls:0000041.control_mean
WBls:0000063 (12)
WBls:000010133.4005From_analysisRNASeq.remanei.total_over_all_stages.control_median
47.7978From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00158475
00158476
00158477
Ortholog (46)
Structured_descriptionAutomated_descriptionPredicted to enable nucleic acid binding activity and poly(A)-specific ribonuclease activity. Predicted to be part of CCR4-NOT complex. Is an ortholog of C. elegans ccf-1. In C. elegans, ccf-1 is involved in nuclear-transcribed mRNA poly(A) tail shortening and oogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE00984
Corresponding_transcriptCRE00984.1
Other_sequence (60)
Experimental_infoExpr_patternExpr1110775
Microarray_resultsGPL14146_CRE00984_604-663_0.933_5_B
GPL14146_CRE00984_720-779_0.952_2_A
GPL14146_CRE00984_826-885_0.933_6_C
MethodGene