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WormBase Tree Display for Gene: WBGene00071522

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Name Class

WBGene00071522SMapS_parentSequenceCrem_Contig8
IdentityVersion3
NameCGC_nameCre-nxf-1From_analysisInferred_from_orthology
Sequence_nameCRE30660
Molecular_nameCRE30660
CRE30660.1
RP32161
Other_namecr01.sctg258.wum.6
Public_nameCre-nxf-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:28WBPerson1847EventCreated
229 Nov 2007 17:00:48WBPerson2970Name_changeCGC_nameCre-nxf-1
303 Jul 2008 11:46:32WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE30660
Other_namecr01.sctg258.wum.6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnxf
RNASeq_FPKMWBls:000000489.2334From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
91.2803From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
93.3273From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:000002748.8591From_analysisRNASeq.remanei.WBls:0000027.control_mean
58.5315From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
60.2029From_analysisRNASeq.remanei.WBls:0000027.control_median
61.8742From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
66.7356From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
8.29518From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003812.1398From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
12.5378From_analysisRNASeq.remanei.WBls:0000038.control_mean
12.6917From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
RNASeq.remanei.WBls:0000038.control_median
12.7819From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:000004125.6863From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
27.5495From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
28.2508From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
40.2708From_analysisRNASeq.remanei.WBls:0000041.control_median
40.682From_analysisRNASeq.remanei.WBls:0000041.control_mean
52.2908From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
54.5743From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
55.7405From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
WBls:0000063 (12)
WBls:000010142.5707From_analysisRNASeq.remanei.total_over_all_stages.control_mean
43.3217From_analysisRNASeq.remanei.total_over_all_stages.control_median
GO_annotation00165486
00165487
00165488
00165489
00165490
00165491
Ortholog (33)
ParalogWBGene00071271Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00075254Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00071524Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be located in cytoplasm and nucleus. Is an ortholog of C. elegans nxf-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE30660
Corresponding_transcriptCRE30660.1
Other_sequenceJI167486.1
JI168580.1
JI171544.1
Dviv_isotig18846
Dviv_isotig18847
MethodGene