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WormBase Tree Display for Gene: WBGene00088574

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Name Class

WBGene00088574SMapS_parentSequencecb25.fpc4126
IdentityVersion2
NameCGC_nameCbr-nhr-162From_analysisInferred_from_orthology
Sequence_nameCBG27160
Molecular_nameCBG27160
CBG27160.1
CBP34798
CBG27160.2
Other_nameCBG_27160Accession_evidenceNDBHE601047
Public_nameCbr-nhr-162
DB_infoDatabaseNDBlocus_tagCBG_27160
SpeciesCaenorhabditis briggsae
HistoryVersion_change123 Jul 2008 11:20:50WBPerson1847EventImportednGASP new gene
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-nhr-162
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
RNASeq_FPKMWBls:00000020.808165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.6876From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.9694From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.28524From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.724722From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.38878From_analysisRNASeq.briggsae.WBls:0000002.control_median
1.44688From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.265707From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.410159From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.554611From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.42258From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.447422From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000041.41028From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1.63227From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
1.85426From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.70339From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
1.73493From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
1.7371From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.98265From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.062772From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.204453From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.961112From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.61611From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.24245From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.29094From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.28044From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000350.150291From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.072956From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.757322From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.37474From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.50829From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.99216From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.21071From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.37073From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.382362From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.447591From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.512819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.685678From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.4768From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.762219From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.85342From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.01162From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
1.36619From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.520632From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.547526From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.569293From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.735605From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.0427From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.407605From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.534079From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.542345From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001010.757322From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.3429From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.909892From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.33166From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00172922
00172923
00172924
00172925
Ortholog (17)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-162.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG27160
Corresponding_transcriptCBG27160.1
CBG27160.2
Other_sequence (25)
Experimental_infoExpr_patternExpr1059298
Microarray_resultsGPL14143_CBG27160_524-583_0.920_13_A
GPL14143_CBG27160_663-722_0.940_2_C
GPL14143_CBG27160_890-949_0.938_4_B
MethodGene