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WormBase Tree Display for Gene: WBGene00088685

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Name Class

WBGene00088685SMapS_parentSequencecb25.fpc4063
IdentityVersion1
NameSequence_nameCBG27271
Molecular_nameCBG27271
CBG27271.1
CBP43116
Other_nameCBG_27271Accession_evidenceNDBHE601529
Public_nameCBG27271
DB_infoDatabaseNDBlocus_tagCBG_27271
SpeciesCaenorhabditis briggsae
HistoryVersion_change123 Jul 2008 11:20:50WBPerson1847EventImportednGASP new gene
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000020.516441From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.529847From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.22095From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.61656From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.949278From_analysisRNASeq.briggsae.WBls:0000002.control_median
1.25789From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.36871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.077629From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.155258From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.051753From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000040.731665From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
1.46333From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.95992From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.05794From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.14494From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
1.72152From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.201214From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.1168From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.14919From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.927207From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.6532From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
2.0009From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000350.559782From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.289896From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.29589From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.38538From_analysisRNASeq.briggsae.WBls:0000038.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.30188From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
2.94973From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.472872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.51486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.590225From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.646359From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.66559From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.932115From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.798853From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.991809From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.42717From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
1.93825From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.407093From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.868987From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.10429From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.33918From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.49437From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.480687From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.792489From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.80427From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001010.559782From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.34093From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.946018From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.30477From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
OrthologCsp11.Scaffold629.g8062Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Pan_g7925Panagrellus redivivusFrom_analysisWormBase-Compara
WBGene00223242Brugia malayiFrom_analysisWormBase-Compara
nigoni.pc_2016.07.11_013.g27766Caenorhabditis nigoniFrom_analysisWormBase-Compara
WBGene00242085Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00278742Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00266881Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288616Trichuris murisFrom_analysisWormBase-Compara
Paralog (220)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Nuclear hormone receptor-like domain superfamily; Ligand-binding domain of nuclear hormone receptor; Nuclear hormone receptor family member nhr-150; and Nuclear hormone receptor, ligand-binding domain.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG27271
Corresponding_CDS_historyCBG27271:bp255
Corresponding_transcriptCBG27271.1
Experimental_infoExpr_patternExpr1067039
Microarray_resultsGPL14143_CBG27271_85-144_0.883_3_C
GPL14143_CBG27271_401-460_0.934_2_B
GPL14143_CBG27271_482-541_0.935_1_A
MethodGene