WormBase Tree Display for Gene: WBGene00092355
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| WBGene00092355 | SMap | S_parent | Sequence | PPA_ChrX | ||
|---|---|---|---|---|---|---|
| Identity | Version | 20 | ||||
| Name | CGC_name | Ppa-ccf-1 | From_analysis | Inferred_from_orthology | ||
| Sequence_name | PPA02801 | |||||
| Molecular_name | PPA02801 | |||||
| PPA02801.1 | ||||||
| PP61597 | ||||||
| Other_name (13) | ||||||
| Public_name | Ppa-ccf-1 | |||||
| Species | Pristionchus pacificus | |||||
| History | Version_change (20) | |||||
| Acquires_merge (12) | ||||||
| Status | Live | |||||
| Gene_info | Biotype | SO:0001217 | ||||
| Gene_class | ccf | |||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
| RNASeq.pristionchus.WBls:0000032.control_median | ||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||
| RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | ||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
| RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| GO_annotation | 00174455 | |||||
| 00174456 | ||||||
| 00174457 | ||||||
| Ortholog (52) | ||||||
| Paralog (11) | ||||||
| Structured_description | Automated_description | Predicted to enable nucleic acid binding activity and poly(A)-specific ribonuclease activity. Predicted to be part of CCR4-NOT complex. Is an ortholog of C. elegans ccf-1. In C. elegans, ccf-1 is involved in nuclear-transcribed mRNA poly(A) tail shortening and oogenesis. | Paper_evidence | WBPaper00065943 | ||
| Curator_confirmed | WBPerson324 | |||||
| WBPerson37462 | ||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||
| Molecular_info | Corresponding_CDS | PPA02801 | ||||
| Corresponding_transcript | PPA02801.1 | |||||
| Experimental_info | Microarray_results | GPL14372_Probes_31985 | ||||
| GPL14372_Probes_31987 | ||||||
| GPL14372_Probes_31988 | ||||||
| Remark | [180319 gw3] The CGC name Ppa-ipla-7 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson4025 | |||
| [190507 pad] The CGC name Ppa-ccf-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
| [191127 pad] The CGC name Ppa-ccf-1.3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
| Method | Gene |
