WormBase Tree Display for Gene: WBGene00093019
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| WBGene00093019 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | Ppa-syg-2 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA03465 | ||||||||
| Molecular_name | PPA03465 | ||||||||
| PPA03465.1 | |||||||||
| PP71162 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000059808 | ||||||||
| GENEPREDICTION_SNAP300000059809 | |||||||||
| UMM-S328-4.20 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-syg-2 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:03 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:48 | WBPerson4055 | Event | Acquires_merge | WBGene00093020 | ||||
| Acquires_merge | WBGene00093020 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syg | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00109093 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00109825 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Fibronectin type III superfamily; Fibronectin type III; Immunoglobulin-like fold; CD80-like C2-set immunoglobulin domain; Immunoglobulin subtype 2; Immunoglobulin domain; Immunoglobulin-like domain superfamily; Fibronectin type III domain; Immunoglobulin subtype; and CD80-like, immunoglobulin C2-set. Is an ortholog of C. elegans syg-2. In C. elegans, syg-2 is involved in cell-cell signaling; nervous system development; and protein localization to synapse. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA03465 | |||||||
| Corresponding_transcript | PPA03465.1 | ||||||||
| Other_sequence (12) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_16278 | |||||||
| GPL14372_Probes_16279 | |||||||||
| GPL14372_Probes_16280 | |||||||||
| GPL14372_Probes_16281 | |||||||||
| GPL14372_Probes_16282 | |||||||||
| GPL14372_Probes_16283 | |||||||||
| GPL14372_Probes_16284 | |||||||||
| GPL14372_Probes_16285 | |||||||||
| GPL14372_Probes_16286 | |||||||||
| Method | Gene |
