WormBase Tree Display for Gene: WBGene00093226
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| WBGene00093226 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | Ppa-deg-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA03672 | ||||||||
| Molecular_name | PPA03672 | ||||||||
| PPA03672.1 | |||||||||
| PP58923 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000061259 | ||||||||
| GENEPREDICTION_SNAP300000061262 | |||||||||
| GENEPREDICTION_SNAP300000061993 | |||||||||
| UMM-S2859-5.18 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-deg-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:48 | WBPerson4055 | Event | Acquires_merge | WBGene00093229 | ||||
| 3 | 24 Nov 2017 09:46:49 | WBPerson4055 | Event | Acquires_merge | WBGene00095089 | ||||
| 4 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-deg-1 | ||||
| Acquires_merge | WBGene00095089 | ||||||||
| WBGene00093229 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | deg | ||||||||
| RNASeq_FPKM | WBls:0000032 | 4.63726 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 3.37126 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 4.63726 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 5.47651 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00174949 | ||||||||
| 00174950 | |||||||||
| 00174951 | |||||||||
| 00174952 | |||||||||
| 00174953 | |||||||||
| Ortholog (26) | |||||||||
| Paralog (46) | |||||||||
| Structured_description | Automated_description | Predicted to enable sodium channel activity. Predicted to be involved in sodium ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans deg-1. In C. elegans, deg-1 is involved in response to acidic pH and response to amino acid. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA03672 | |||||||
| Corresponding_transcript | PPA03672.1 | ||||||||
| Other_sequence (25) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_2305 | |||||||
| GPL14372_Probes_2306 | |||||||||
| GPL14372_Probes_39215 | |||||||||
| Method | Gene |
