WormBase Tree Display for Gene: WBGene00095200
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| WBGene00095200 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 9 | |||||||
| Name | CGC_name | Ppa-vps-52.2 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA05646 | ||||||||
| Molecular_name | PPA05646 | ||||||||
| PPA05646.1 | |||||||||
| PP02719 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000062107 | ||||||||
| GENEPREDICTION_SNAP300000083213 | |||||||||
| Ppa-tag-197 | |||||||||
| UMM-S419-2.50 | Person_evidence | WBPerson606 | |||||||
| Ppa-vps-52 | From_analysis | Inferred_from_orthology | |||||||
| Public_name | Ppa-vps-52.2 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 17 Nov 2017 15:19:42 | WBPerson4055 | Name_change | CGC_name | Ppa-vps-52 | ||||
| 3 | 24 Nov 2017 09:46:51 | WBPerson4055 | Event | Acquires_merge | WBGene00115919 | ||||
| 4 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00202921 | ||||
| 5 | 20 Mar 2018 10:26:13 | WBPerson4025 | Name_change | CGC_name | Ppa-vps-52.2 | ||||
| Other_name | Ppa-vps-52 | ||||||||
| 6 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Ppa-vps-52 | ||||
| Other_name | Ppa-vps-52.2 | ||||||||
| 7 | 08 May 2019 10:09:28 | WBPerson1983 | Name_change | CGC_name | Ppa-vps-52.2 | ||||
| Other_name | Ppa-vps-52 | ||||||||
| 8 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Ppa-vps-52 | ||||
| Other_name | Ppa-vps-52.2 | ||||||||
| 9 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-vps-52.2 | ||||
| Other_name | Ppa-vps-52 | ||||||||
| Acquires_merge | WBGene00115919 | ||||||||
| WBGene00202921 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||||
| GO_annotation | 00175784 | ||||||||
| 00175785 | |||||||||
| 00175786 | |||||||||
| 00175787 | |||||||||
| Ortholog (17) | |||||||||
| Paralog | WBGene00097072 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00102046 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00108277 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00110455 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00116322 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00118191 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00272113 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00272274 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00275716 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be part of nucleosome. Is an ortholog of C. elegans vps-52. In C. elegans, vps-52 is involved in negative regulation of dense core granule transport; positive regulation of dense core granule transport; and positive regulation of locomotion involved in locomotory behavior. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA05646 | |||||||
| Corresponding_transcript | PPA05646.1 | ||||||||
| Other_sequence | FG585739.1 | ||||||||
| DA00591 | |||||||||
| Method | Gene |
