WormBase Tree Display for Gene: WBGene00095829
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| WBGene00095829 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | |||||||
| Name | CGC_name | Ppa-dpy-18 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA06275 | ||||||||
| Molecular_name | PPA06275 | ||||||||
| PPA06275.1 | |||||||||
| PP53459 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000062640 | ||||||||
| UMM-S112-33.9 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-dpy-18 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 3 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-dpy-18 | ||||
| 4 | 04 Jun 2020 14:38:22 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-dpy-18 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dpy | ||||||||
| RNASeq_FPKM | WBls:0000032 | 48.8095 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 25.8772 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 28.8222 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00176136 | ||||||||
| 00176137 | |||||||||
| 00176138 | |||||||||
| 00176139 | |||||||||
| 00176140 | |||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00097133 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00107998 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable L-ascorbic acid binding activity; iron ion binding activity; and procollagen-proline 4-dioxygenase activity. Predicted to be located in endoplasmic reticulum. Is an ortholog of C. elegans dpy-18. In C. elegans, dpy-18 is involved in several processes, including cuticle development involved in collagen and cuticulin-based cuticle molting cycle; embryo development; and embryonic body morphogenesis. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA06275 | |||||||
| Corresponding_transcript | PPA06275.1 | ||||||||
| Other_sequence (54) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_2783 | |||||||
| GPL14372_Probes_2785 | |||||||||
| GPL14372_Probes_2786 | |||||||||
| GPL14372_Probes_40177 | |||||||||
| GPL14372_Probes_40178 | |||||||||
| GPL14372_Probes_40179 | |||||||||
| GPL14372_Probes_40180 | |||||||||
| GPL14372_Probes_40181 | |||||||||
| Expression_cluster | WBPaper00061743:ppa-eud-1(tu1069)_regulated | ||||||||
| WBPaper00041207:PP_dauer_down | |||||||||
| Remark | [190208 pad] The CGC name Ppa-dpy-18 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [200603 pad] The CGC name Ppa-dpy-18 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
