WormBase Tree Display for Gene: WBGene00099162
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| WBGene00099162 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-smo-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA09608 | ||||||||
| Molecular_name | PPA09608 | ||||||||
| PPA09608.1 | |||||||||
| PP27395 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000066142 | ||||||||
| UMS-S293-11.82 | Person_evidence | WBPerson606 | |||||||
| Ppa-smo-1.1 | From_analysis | Inferred_from_orthology | |||||||
| Public_name | Ppa-smo-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-smo-1 | ||||
| 3 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Ppa-smo-1.1 | ||||
| Other_name | Ppa-smo-1 | ||||||||
| 4 | 08 May 2019 10:09:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Ppa-smo-1.1 | ||||
| 6 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-smo-1 | ||||
| Other_name | Ppa-smo-1.1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smo | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00092401 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00271978 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00281685 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Rad60/SUMO-like domain; Ubiquitin-2 like Rad60 SUMO-like; Ubiquitin-like domain superfamily; and Ubiquitin-like domain. Is an ortholog of C. elegans smo-1. In C. elegans, smo-1 is involved in several processes, including chromosome organization; multicellular organismal locomotion; and muscle cell cellular homeostasis. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA09608 | |||||||
| Corresponding_transcript | PPA09608.1 | ||||||||
| Other_sequence | BU087922.1 | ||||||||
| BU086506.1 | |||||||||
| BU089168.1 | |||||||||
| BU088743.1 | |||||||||
| NAC01310_1 | |||||||||
| HC04395 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_65042 | |||||||
| Remark | [190507 pad] The CGC name Ppa-smo-1.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| Method | Gene |
