Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00099347

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00099347SMapS_parentSequencePPA_ChrX
IdentityVersion4
NameCGC_namePpa-slcr-46.1.1From_analysisInferred_from_orthology
Sequence_namePPA09793
Molecular_namePPA09793
PPA09793.1
PP68216
Other_nameGENEPREDICTION_SNAP300000066325
UMM-S453-1.34Person_evidenceWBPerson606
Public_namePpa-slcr-46.1.1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:04WBPerson4055EventImportedfrom NGASP
201 Oct 2019 10:47:49WBPerson1983Name_changeCGC_namePpa-slcr-46.1.1
328 May 2021 19:05:19WBPerson1983Name_changeCGC_nameRemoved
428 Jul 2021 11:12:29WBPerson1983Name_changeCGC_namePpa-slcr-46.1.1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classslcr
RNASeq_FPKMWBls:00000327.13794From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010111.2403From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
6.12608From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
7.13794From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
GO_annotation00177819
00177820
Ortholog (24)
ParalogWBGene00089749Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00102163Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00106714Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00116171Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Is an ortholog of C. elegans slcr-46.1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA09793
Corresponding_transcriptPPA09793.1
Other_sequenceTcol_isotig13056
Acan_isotig09608
Oden_isotig24839
ACC01239_1
MH09927
Tcir_isotig28489
Tcir_isotig13933
Experimental_infoMicroarray_resultsGPL14372_Probes_5550
GPL14372_Probes_5551
GPL14372_Probes_5552
GPL14372_Probes_5553
GPL14372_Probes_5554
GPL14372_Probes_46541
GPL14372_Probes_46542
GPL14372_Probes_46543
Remark[210528 pad] The CGC name Ppa-slcr-46.1.1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene