WormBase Tree Display for Gene: WBGene00099475

WBGene00099475 SMap: S_parent: Sequence: PPA_ChrII
  Identity: Version: 12
    Name: Sequence_name: PPA09921
      Molecular_name: PPA09921
        PPA09921.1
        PP54333
      Other_name: GENEPREDICTION_SNAP300000066456
        GENEPREDICTION_SNAP300000082026
        GENEPREDICTION_SNAP300000082027
        GENEPREDICTION_SNAP300000082028
        GENEPREDICTION_SNAP300000082029
        GENEPREDICTION_SNAP300000082030
        GENEPREDICTION_SNAP300000082031
        GENEPREDICTION_SNAP300000082032
        UMM-S498-0.87 Person_evidence: WBPerson606
        Ppa-tag-297 Inferred_automatically: from gene merge
      Public_name: PPA09921
    Species: Pristionchus pacificus
    History: Version_change (12)
      Acquires_merge: WBGene00114735
        WBGene00114736
        WBGene00114738
        WBGene00114733
        WBGene00114732
        WBGene00114734
        WBGene00114737
        WBGene00204713
        WBGene00205356
        WBGene00206184
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000032 8.16317 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 4.07312 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
            RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
        4.07876 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
    Ortholog (40)
    Paralog: WBGene00095695 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00098403 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00104946 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00109058 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00113122 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00276112 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in intestine based on RNA-seq studies. Is predicted to encode a protein with the following domains: Immunoglobulin I-set domain; Immunoglobulin-like domain superfamily; EGF-like domain; Laminin EGF domain; Laminin-type EGF domain; Immunoglobulin subtype 2; Concanavalin A-like lectin/glucanase domain superfamily; Low-density lipoprotein (LDL) receptor class A repeat; Immunoglobulin I-set; Immunoglobulin-like domain; Laminin IV; Immunoglobulin domain; LDL receptor-like superfamily; Laminin G domain; Laminin B (Domain IV); Immunoglobulin-like fold; Growth factor receptor cysteine-rich domain superfamily; Low-density lipoprotein receptor domain class A; and Immunoglobulin subtype. Is an ortholog of C. elegans tag-297 and unc-52. In C. elegans, unc-52 is involved in several processes, including hemidesmosome assembly; muscle cell cellular homeostasis; and muscle structure development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA09921
    Corresponding_transcript: PPA09921.1
    Other_sequence: MPC00091_1
      JI164586.1
      EX537642.1
      BXC07252_1
      SRC01497_1
      SR03042
      HG11840
      CJC04271_1
      JI472628.1
      AW980135.1
      Tcir_isotig07331
      CJC00153_1
      TCC00662_1
      OVC03932_1
      TX01158
      JI480990.1
      ACC21744_1
      Y16017.1
      ACC07357_1
      BMC17207_1
      SSC02662_1
      Acan_isotig18116
      JI163833.1
      MP00003
      DIC00298_1
      HBC21957_1
      Oden_isotig18007
      DN556900.1
      Tcol_isotig21570
      JI163784.1
      Oden_isotig19886
      FC547807.1
      CR06729
      MHC00359_1
      Tcol_isotig00013
      MIC04722_1
      JI166241.1
      BMC11316_1
      CRC00117_1
      MCC00086_1
      JI460270.1
      MJ03208
      DI00788
      CBC01765_1
      Oden_isotig19051
      JI470467.1
      MI05381
      CBC12429_1
      HBC17672_1
      SSC05847_1
      Oden_isotig09710
      JI472463.1
      Dviv_isotig30728
      EX013376.1
      CR03618
      Oden_isotig28102
      AI096109.1
      MP00024
      MJC00774_1
      HCC00246_1
      CRC04014_1
      HBC15168_1
      GO239776.1
      JI477288.1
      Tcol_isotig00011
      Dviv_isotig30403
      Tcol_isotig27016
      GE638451.1
      MC01336
      EX555074.1
      ACC31221_1
      JI462517.1
      Dviv_isotig32666
      FG974558.1
      FG976173.1
      JO472119.1
      AAC00201_1
      BMC09974_1
      Tcol_isotig00012
      BMC06478_1
      Name_isotig09025
      EX009660.1
      Tcol_isotig08454
      Hbac_isotig01765
      HGC05459_1
      DN190843.1
      EX539191.1
      MJ03592
      Dviv_isotig14480
      MJ01789
      OVC00746_1
      JI470916.1
      CR02146
      CRC00301_1
      Dviv_isotig14482
      SS02042
      HC05982
      JI249557.1
      JI163789.1
      Acan_isotig17249
      CN477657.1
      HBC20053_1
      MJ00242
      BUC00946_1
      CRC11288_1
      MA01468
      CJC08193_1
      Tcol_isotig00010
      Dviv_isotig15426
      FK801522.1
      JI163775.1
      FC817359.1
      HG07939
      Dviv_isotig14481
      MH00201
      ACC16243_1
      MAC00773_1
      Tcol_isotig08453
      JI172583.1
      PPC11311_1
      HGC04469_1
      JI474079.1
      LSC00278_1
      MJC01516_1
  Experimental_info: Microarray_results (34)
    Expression_cluster: WBPaper00041472:Phosphorylated_protein
      WBPaper00049334:PE_intestine_enriched
      WBPaper00050265:C.albidus_vs_OP50_downregulated
      WBPaper00050265:C.albidus_vs_OP50_upregulated
      WBPaper00050265:C.curvatus_vs_OP50_downregulated
      WBPaper00041207:PP_dauer_down
  Method: Gene