WormBase Tree Display for Gene: WBGene00101609
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| WBGene00101609 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | Sequence_name | PPA12055 | |||||||
| Molecular_name | PPA12055 | ||||||||
| PPA12055.1 | |||||||||
| PP58357 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000068941 | ||||||||
| GENEPREDICTION_SNAP300000079588 | |||||||||
| GENEPREDICTION_SNAP300000078796 | |||||||||
| UMS-S2845-3.28 | Person_evidence | WBPerson606 | |||||||
| Ppa-dylt-1 | From_analysis | Inferred_from_orthology | |||||||
| Public_name | PPA12055 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:50 | WBPerson4055 | Event | Acquires_merge | WBGene00110049 | ||||
| 3 | 24 Nov 2017 09:46:51 | WBPerson4055 | Event | Acquires_merge | WBGene00111806 | ||||
| 4 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-smf-2 | ||||
| Other_name | Ppa-dylt-1 | ||||||||
| 5 | 08 Feb 2019 15:42:27 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 08 May 2019 10:09:26 | WBPerson1983 | Name_change | CGC_name | Ppa-smf-2 | ||||
| 7 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| Acquires_merge | WBGene00110049 | ||||||||
| WBGene00111806 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| RNASeq_FPKM | WBls:0000032 | 5.7665 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 3.28416 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 4.08597 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00178720 | ||||||||
| 00178721 | |||||||||
| 00178722 | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00278564 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable metal ion transmembrane transporter activity. Predicted to be involved in metal ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans dylt-1; smf-1; and smf-2. In C. elegans, smf-1 is involved in monoatomic cation homeostasis; negative regulation of cellular response to manganese ion; and response to manganese ion. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA12055 | |||||||
| Corresponding_transcript | PPA12055.1 | ||||||||
| Other_sequence (26) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_74659 | |||||||
| GPL14372_Probes_74661 | |||||||||
| GPL14372_Probes_74662 | |||||||||
| GPL14372_Probes_74663 | |||||||||
| GPL14372_Probes_74664 | |||||||||
| GPL14372_Probes_74665 | |||||||||
| GPL14372_Probes_74666 | |||||||||
| GPL14372_Probes_74667 | |||||||||
| GPL14372_Probes_74668 | |||||||||
| GPL14372_Probes_74669 | |||||||||
| Remark | [190208 pad] The CGC name Ppa-smf-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-smf-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
