WormBase Tree Display for Gene: WBGene00104630
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| WBGene00104630 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | CGC_name | Ppa-mmcm-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA15076 | ||||||||
| Molecular_name | PPA15076 | ||||||||
| PPA15076.1 | |||||||||
| PP72197 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000074772 | ||||||||
| UMM-S66-27.68 | Person_evidence | WBPerson606 | |||||||
| Ppa-mmcm-1.1 | From_analysis | Inferred_from_orthology | |||||||
| Public_name | Ppa-mmcm-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-mmcm-1 | ||||
| 3 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:24 | WBPerson1983 | Name_change | CGC_name | Ppa-mmcm-1 | ||||
| 5 | 27 Nov 2019 12:48:14 | WBPerson1983 | Name_change | CGC_name | Ppa-mmcm-1.1 | ||||
| Other_name | Ppa-mmcm-1 | ||||||||
| 6 | 04 Feb 2020 15:43:56 | WBPerson1983 | Name_change | CGC_name | Ppa-mmcm-1 | ||||
| Other_name | Ppa-mmcm-1.1 | ||||||||
| 7 | 04 Jun 2020 14:38:22 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 8 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-mmcm-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mmcm | ||||||||
| RNASeq_FPKM | WBls:0000032 | 2.97815 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 2.97815 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 3.33739 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| 7.03402 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00179963 | ||||||||
| 00179964 | |||||||||
| 00179965 | |||||||||
| 00179966 | |||||||||
| 00179967 | |||||||||
| 00179968 | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00275806 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable cobalamin binding activity; metal ion binding activity; and methylmalonyl-CoA mutase activity. Is an ortholog of C. elegans mmcm-1. In C. elegans, mmcm-1 is involved in amino acid metabolic process and fatty acid metabolic process. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA15076 | |||||||
| Corresponding_transcript | PPA15076.1 | ||||||||
| Other_sequence (127) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_5796 | |||||||
| GPL14372_Probes_5797 | |||||||||
| GPL14372_Probes_5798 | |||||||||
| GPL14372_Probes_46930 | |||||||||
| GPL14372_Probes_46931 | |||||||||
| GPL14372_Probes_46934 | |||||||||
| GPL14372_Probes_46935 | |||||||||
| GPL14372_Probes_46936 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
| Remark | [190208 pad] The CGC name Ppa-mmcm-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [200603 pad] The CGC name Ppa-mmcm-1 was deleted as there was no evidence to support it. This name has correctly been assigned to WBGene00275806 | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
