WormBase Tree Display for Gene: WBGene00105040
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| WBGene00105040 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-odc-1.1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA15486 | ||||||||
| Molecular_name | PPA15486 | ||||||||
| PPA15486.1 | |||||||||
| PP63739 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000072236 | ||||||||
| UMM-S2840-22.7 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-odc-1.1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-odc-1.2 | ||||
| 3 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:27 | WBPerson1983 | Name_change | CGC_name | Ppa-odc-1.2 | ||||
| 5 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-odc-1.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | odc | ||||||||
| RNASeq_FPKM | WBls:0000032 | 18.4307 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 6.14357 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00180206 | ||||||||
| 00180207 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00102629 | Pristionchus pacificus | From_analysis | Inparanoid_7 | |||||
| WormBase-Compara | |||||||||
| WBGene00098804 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00115952 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00280493 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable catalytic activity. Predicted to be involved in polyamine biosynthetic process. Is an ortholog of C. elegans odc-1. In C. elegans, odc-1 is involved in putrescine biosynthetic process from ornithine. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA15486 | |||||||
| Corresponding_transcript | PPA15486.1 | ||||||||
| Other_sequence | XI01320 | ||||||||
| XIC01853_1 | |||||||||
| XIC03281_1 | |||||||||
| XI01173 | |||||||||
| CV199609.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_58203 | |||||||
| GPL14372_Probes_58205 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| Remark | [190208 pad] The CGC name Ppa-odc-1.2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-odc-1.2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
