WormBase Tree Display for Gene: WBGene00106999
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| WBGene00106999 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-kars-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA17445 | ||||||||
| Molecular_name | PPA17445 | ||||||||
| PPA17445.1 | |||||||||
| PP57035 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000074140 | ||||||||
| Ppa-krs-1 | From_analysis | Inferred_from_orthology | |||||||
| UMS-S139-20.50 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-kars-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 29 Jan 2010 10:38:19 | WBPerson2970 | Name_change | CGC_name | Ppa-kars-1 | ||||
| Other_name | Ppa-krs-1 | ||||||||
| 3 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:26 | WBPerson1983 | Name_change | CGC_name | Ppa-kars-1 | ||||
| 5 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-kars-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | kars | ||||||||
| RNASeq_FPKM | WBls:0000032 | 71.8831 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 50.7296 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 71.8831 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 80.3058 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00181066 | ||||||||
| 00181067 | |||||||||
| 00181068 | |||||||||
| 00181069 | |||||||||
| 00181070 | |||||||||
| 00181071 | |||||||||
| 00181072 | |||||||||
| 00181073 | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00090213 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00094728 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00276427 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable ATP binding activity; lysine-tRNA ligase activity; and nucleic acid binding activity. Predicted to be involved in lysyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Is an ortholog of C. elegans kars-1. In C. elegans, kars-1 is involved in several processes, including determination of adult lifespan; positive regulation of nematode larval development; and regulation of brood size. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA17445 | |||||||
| Corresponding_transcript | PPA17445.1 | ||||||||
| Other_sequence (166) | |||||||||
| Remark | [190208 pad] The CGC name Ppa-kars-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-kars-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
