WormBase Tree Display for Gene: WBGene00108383
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| WBGene00108383 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | Ppa-sdpn-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA18829 | ||||||||
| Molecular_name | PPA18829 | ||||||||
| PPA18829.1 | |||||||||
| PP14379 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000075643 | ||||||||
| UMM-S293-6.49 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-sdpn-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sdpn | ||||||||
| RNASeq_FPKM | WBls:0000032 | 15.6984 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 13.4731 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 15.6984 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 24.721 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| Ortholog (30) | |||||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Fes/CIP4, and EFC/F-BAR homology domain; SH3-like domain superfamily; SH3 domain; AH/BAR domain superfamily; and FCH domain. Is an ortholog of C. elegans sdpn-1. In C. elegans, sdpn-1 is involved in endocytic recycling. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA18829 | |||||||
| Corresponding_transcript | PPA18829.1 | ||||||||
| Other_sequence | Acan_isotig08245 | ||||||||
| Dviv_isotig23203 | |||||||||
| Oden_isotig18831 | |||||||||
| Tcir_isotig27258 | |||||||||
| Method | Gene |
