WormBase Tree Display for Gene: WBGene00108406
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| WBGene00108406 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | Ppa-cup-4 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA18852 | ||||||||
| Molecular_name | PPA18852 | ||||||||
| PPA18852.1 | |||||||||
| PP26976 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000075666 | ||||||||
| UMM-S293-7.73 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-cup-4 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cup | ||||||||
| RNASeq_FPKM | WBls:0000032 | 2.87491 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 10.1865 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 2.87491 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 4.3538 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00181811 | ||||||||
| 00181812 | |||||||||
| 00181813 | |||||||||
| 00181814 | |||||||||
| 00181815 | |||||||||
| 00181816 | |||||||||
| Ortholog (29) | |||||||||
| Paralog (120) | |||||||||
| Structured_description | Automated_description | Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans cup-4. In C. elegans, cup-4 is involved in several processes, including determination of adult lifespan; positive regulation of egg-laying behavior; and response to caloric restriction. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA18852 | |||||||
| Corresponding_transcript | PPA18852.1 | ||||||||
| Other_sequence | JI169898.1 | ||||||||
| JO468316.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_75749 | |||||||
| GPL14372_Probes_75750 | |||||||||
| GPL14372_Probes_75751 | |||||||||
| GPL14372_Probes_75752 | |||||||||
| Method | Gene |
